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37 Open 63 Closed
37 Open 63 Closed
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Issues list

trouble matching results with those from simple mixed model
#104 opened Nov 12, 2024 by rkb965
FarmCPU output: NA in the fields of allelic effect, SE, and p-value
#101 opened Sep 10, 2024 by AndModica
Warning message not reflected by the output
#99 opened Aug 2, 2024 by AndModica
2
Problems on Import genotype file to R from TASSEL
#98 opened Jul 13, 2024 by wangchunli2024
8
No PC or Kinship generated
#97 opened Apr 9, 2024 by ramendra-sarma
Question about PCA analysis
#96 opened Mar 19, 2024 by 1795106897
Manhattan plot
#95 opened Feb 8, 2024 by elissaralam
NA is not allowed in genotype, use 'MVP.Data.impute' to impute
#94 opened Dec 14, 2023 by suvihon
1
Fitting PCs with nPC vs CV
#93 opened Dec 6, 2023 by JandehF
3
A question about VCF format conversion
#92 opened Dec 5, 2023 by yuxizhang01
3
How can I calculate kinship matrix using the geno matrix?
#91 opened Nov 28, 2023 by bechee
Can rMVP work on continuous genotype data?
#87 opened Aug 16, 2023 by White-Shinobi
1
PCA code given in the main pages only giving the 2D PCA, but image of 3D PCA plot is also given but its code is not provide, kindly please provide the code for 3D plot
#86 opened Jun 19, 2023 by krishna10597
Total 1 individuals removed due to missings Error in GetElements.bm(x, i, j) : Illegal column index usage in extraction. Calls: MVP -> [ -> [ -> .local -> GetElements.bm
#85 opened May 19, 2023 by kmosi0
ERROR: At least 2 columns in the phenotype file should be specified, please check the parameter 'sep.phe'.
#84 opened Jan 4, 2023 by rupesht
1
ERROR: At least 2 columns in the phenotype file should be specified, please check the parameter 'sep.phe'.
#83 opened Jan 3, 2023 by rupesht
6
Calculating PVE in rMVP
#82 opened Nov 9, 2022 by jhavill
1
Error in analysing the all phenotype
#81 opened Nov 3, 2022 by ramendra-sarma
Performing FarmCPU with iteraction between SNP
#80 opened Aug 11, 2022 by DominiqueAhouanhode
2
Problem in imMVP execution "Number of individuals in phenotype and genotype doesn't match"
#77 opened Apr 25, 2022 by DominiqueAhouanhode
5
Unable to run rMVP Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'nrow': object 'Phenotype' not found
#75 opened Mar 9, 2022 by rupesht
1
implement BLINK method in rMVP
#74 opened Feb 13, 2022 by binlu1981
set encoded sex as factor or numeric
#73 opened Feb 9, 2022 by binlu1981
1
identical result from GLM and FarmCPU
#72 opened Feb 8, 2022 by binlu1981
5
error in MVP.Data.Numeric2MVP processing separator
#71 opened Nov 23, 2021 by liusy-jz
ProTip! Updated in the last three days: updated:>2024-11-20.