Problem in imMVP execution "Number of individuals in phenotype and genotype doesn't match"

[DominiqueAhouanhode]

Hello!
Here is my code to perform imMVP function, but error message occurs.
I have 24 individuals in the phenotype file and 24 columns in genotype matrix.

imMVP <- MVP(phe=phenotype,
geno=genotype,
map=map,
#K=Kinship,
#CV.GLM=Covariates,
#CV.MLM=Covariates,
#CV.FarmCPU=Covariates,
nPC.GLM=5,
nPC.MLM=3,
nPC.FarmCPU=3,
priority="speed",
#ncpus=10,
vc.method="BRENT",
maxLoop=10,
method.bin="FAST-LMM",
#permutation.threshold=TRUE,
#permutation.rep=100,
threshold=0.05,
method=c("GLM", "MLM", "FarmCPU")
)

Error in MVP(phe = phenotype, geno = genotype, map = map, nPC.GLM = 5, :
The number of individuals in phenotype and genotype doesn't match!

[YinLiLin]

Please use dim(phenotype) and dim(genotype) to check the dimension of those two matrices again.

[DominiqueAhouanhode]

They have a same dimension

[YinLiLin]

Would you mind sending us your data by email? we are pleased to debug rMVP with this issue.

[DominiqueAhouanhode]

I have seen the error. The matrix was auto-transposed. So I used auto-transpose=False in the conversion of my matrix in MVP file. Thanks for this amazing package. Le mar. 26 avr. 2022 à 10:05, Lilin Yin ***@***.***> a écrit :

…

Would you mind sending us your data by email? we are pleased to debug rMVP with this issue. — Reply to this email directly, view it on GitHub <#77 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AYXNQNDPYBVWPUPICM5AZYDVG6PULANCNFSM5UIVOAAQ> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[DominiqueAhouanhode]

Thanks for your answer, But I find the same dimension when for them. There are not another possibility please? Le mar. 26 avr. 2022 à 02:33, Lilin Yin ***@***.***> a écrit :

…

Please use dim(phenotype) and dim(genotype) to check the dimension of those two matrices again. — Reply to this email directly, view it on GitHub <#77 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AYXNQNC4LVCIMJOPAMHUH2LVG42U5ANCNFSM5UIVOAAQ> . You are receiving this because you authored the thread.Message ID: ***@***.***>