Spatial alignment of single cell transcriptomic data.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.

Single Cell RNA Intron-Exon counting

Taller CDSB: Construyendo flujos de trabajo con RStudio y Bioconductor para datos transcriptómicos de single cell (RNA-seq)

snRNA_seq portion of the spatialDLPFC project

Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data

habenulaPilot project code repository

A tool for single cell genomics data processing and analysis

An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.