sccrispr-seq

Here are 2 public repositories matching this topic...

epigen / scrnaseq_processing_seurat

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

visualization workflow bioinformatics snakemake scrna-seq single-cell 10xgenomics biomedical-data-science cite-seq snrna-seq sccrispr-seq

Updated Nov 19, 2024
R

epigen / mixscape_seurat

Star

A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.

visualization workflow bioinformatics snakemake scrna-seq single-cell biomedical-data-science perturbation-analysis snrna-seq sccrispr-seq

Updated Nov 6, 2024
R

Improve this page

Add a description, image, and links to the sccrispr-seq topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the sccrispr-seq topic, visit your repo's landing page and select "manage topics."

Learn more

Provide feedback

Saved searches

Use saved searches to filter your results more quickly