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protein-prediction

Here are 16 public repositories matching this topic...

bio_embeddings

sacdallago / bio_embeddings

Get protein embeddings from protein sequences

machine-learning pipeline protein-structure protein-sequences language-model protein-prediction bio-embeddings sequence-embeddings embedders

Updated Apr 28, 2023
HTML

LucaAngioloni / ProteinSecondaryStructure-CNN

Protein Secondary Structure predictor using Convolutional Neural Networks

machine-learning deep-learning pdb chain protein-structure keras cnn structure-prediction protein-prediction cullpdb

Updated Jul 15, 2023
Python

westlake-repl / ProTrek

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

protein-annotation protein-alignment mmseqs2 protein-prediction contrastive-learning protein-language-model protein-pretraining foldseek sequence-structure

Updated Nov 19, 2024
Python

breimanntools / aaanalysis

Python framework for interpretable protein prediction

machine-learning feature-selection feature-engineering positive-unlabeled-learning protein-prediction explainability intepretable-machine-learning intrepretability

Updated Jul 3, 2024
Jupyter Notebook

BernhoferM / TMbed

Transmembrane proteins predicted through Language Model embeddings

machine-learning bioinformatics deep-learning pytorch protein-prediction transmembrane-proteins protein-embeddings

Updated Mar 7, 2024
Python

zhouzilu / cTPnet

cTPnet Package

deep-neural-networks scrna-seq protein-prediction ctp-net surface-protein-imputation

Updated Jul 12, 2022
Python

jahnl / binding_in_disorder

Prediction of Binding Residues in Disordered Regions Based on Protein Embeddings; TUM Master Praktikum Bioinformatics 2022 (Project #3) and Master's Thesis

machine-learning bioinformatics deep-learning binding-sites protein-prediction

Updated May 7, 2024
Python

mainpyp / cls-protein-prediction

Code and results for the practical exercises of the course "Protein Prediction 2" in Winter 21/22 at TUM Authors: Adrian Henkel, Finn Gaida, Lis Arend, Sebastian Dötsch, Shlomo Libo Feigin

deep-learning protein-prediction

Updated Feb 6, 2022
Jupyter Notebook

prajuktadey / Protein-Function-Prediction

graph-convolutional-networks protein-prediction gnn-model

Updated Oct 8, 2023
Jupyter Notebook

justin-tpb / Vampyrellida-genomics

Scripts and data regarding Vampyrellida genomics.

nanopore genomics illumina genome-analysis genome-assembly protein-prediction

Updated Jul 29, 2024
Shell

grace-raper / markov-protein-prediction

Utilizes Markov Models to predict protein coding genes

java markov-model machine-learning matlab computational-biology dna-sequences protein-prediction

Updated Aug 20, 2022
MATLAB

kiwi2kiwi / Phosphorylation_prediction

Predicting phosphorylation sites from sequence and structure via a GNN

machine-learning bioinformatics protein-prediction graph-neural-network

Updated Sep 9, 2022
Python

Rostlab / TMbed

Transmembrane proteins predicted through Language Model embeddings

machine-learning bioinformatics deep-learning pytorch protein-prediction transmembrane-proteins protein-embeddings

Updated Jun 12, 2022

mathieubolteau / GLOG-Project

Repository for the software engineering project during the second year of the Master of Bioinformatics at the University of Bordeaux.

bioinformatics web-development python3 html-css-javascript flask-server 3d-visualization bordeaux-university protein-prediction 2d-visualization

Updated Dec 14, 2020
JavaScript

HNOX_Pred

JasonJiangs / HNOX_Pred

HNOXPred: a web tool for the prediction of gas sensing H-NOX proteins from amino acid sequence

javascript mysql python flask webserver bioinformatics-algorithms protein-prediction

Updated Jan 15, 2023
JavaScript

Rostlab / bio_embeddings

Repository containing bio_embeddings resources

bioinformatics protein-structure protein-prediction protein-embeddings

Updated Jan 2, 2021

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