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protein-embeddings

Here are 5 public repositories matching this topic...

ISYSLAB-HUST / ProtFlash

ProtFlash: A lightweight protein language model

bioinformatics pretrained-models protein-sequence protein-representation-learning protein-embeddings protein-language-model

Updated Mar 2, 2024
Python

BernhoferM / TMbed

Transmembrane proteins predicted through Language Model embeddings

machine-learning bioinformatics deep-learning pytorch protein-prediction transmembrane-proteins protein-embeddings

Updated Mar 7, 2024
Python

jhadziahDev / Diverse-Protein-Discovery-in-Large-Scale-Datasets-A-Machine-Learning-Perspective

This work was aimed at finding methods to identify the most distant proteins and most diverse subsets of proteins from large protein databases in a scalable and efficient way using a dataset of protein embeddings from SwissProt, data mining techniques and metaheuristics.

data-science bioinformatics proteins machine-learning-algorithms bigdata bruteforce embeddings memetic-algorithms tabu-search diversity-measures dissertation-project metaheuristic-algorithms protein-embeddings maxsum

Updated Jan 10, 2024
Python

Rostlab / TMbed

Transmembrane proteins predicted through Language Model embeddings

machine-learning bioinformatics deep-learning pytorch protein-prediction transmembrane-proteins protein-embeddings

Updated Jun 12, 2022

Rostlab / bio_embeddings

Repository containing bio_embeddings resources

bioinformatics protein-structure protein-prediction protein-embeddings

Updated Jan 2, 2021

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