Python package that uses colorspace-based segmentation to analyze histopathology images.
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Feb 7, 2024 - Python
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collagen
Here are 14 public repositories matching this topic...
A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
finite-elements
biophysics
particle-image-velocimetry
collagen
traction-force-microscopy
material-simulation
multicellular-aggregates
spheroid
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Nov 15, 2024 - Python
Intelligent System for Analysis, Model Building And Rational Design.
python
api
bioinformatics
analysis
structural-biology
pypi
computational-biology
modelling
bristol
protein-design
coiled-coil
collagen
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Apr 20, 2018 - Python
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
fibers
image-processing
tfm
orientation
ecm
microscopy
imaging
collagen
cell-mechanics
fibrosis
traction-force-microscopy
contractility
mechanobiology
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Nov 27, 2024 - Python
Shape Collage generator for Windows !
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Sep 25, 2019
A web application for atomistic modelling of coiled coils and collagens.
javascript
docker
science
flask
mongodb
elm
web-app
protein-structure
protein
scientific-computing
coiled-coil
collagen
isambard
woolfson-group
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Nov 22, 2023 - Elm
ImageJ / FIJI script to analyse picrosirius red stained sections imaged under polarising light
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Updated
Oct 2, 2020
MSDS Thesis - Pan-Collagen Survival Analysis of CNV in Ovarian Cancer
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Aug 29, 2021 - HTML
Species identification based on mass spectrometry biomarker clustering
binary-data
python3
species
mass-spectrometry
clustering-algorithm
clustering-evaluation
collagen
hierarchical-clustering
biomarkers
k-modes
k-means-implementation-in-python
species-identity
species-identification
collagen-peptidemass-fingerprinting
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Apr 18, 2019 - Jupyter Notebook
ImageJ / FIJI script to assess the orientation of collagen fibres in SHG images
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Oct 2, 2020
Matlab based program for automatic chain tracing for AFM images of single molecule collagen, DNA, and other polymers.
automation
afm
image-processing
dna
image-segmentation
collagen
tracing-applications
persistence-length
filament-tracking
filament-detection
afm-image-segmentation
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Jun 23, 2022 - MATLAB
chain tracing program developed to analyze AFM images of single molecules
afm
image-processing
dna
collagen
tracing-applications
persistence-length
filament-tracking
afm-image-segmentation
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Jul 27, 2022 - MATLAB
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
survival-analysis
signaling-pathways
collagen
differential-gene-expression
metabolic-models
prostate-cancer
semi-supervised-clustering
gradient-boosted-machines
gene-ontology-terms
gene-set-enrichment-analysis
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Feb 26, 2024 - R
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