Calculate semantic distance for sets of Gene Ontology terms
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Updated
Feb 15, 2024 - Python
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gene-ontology-terms
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This project features a pipeline for Gene Ontology (GO) enrichment analysis on candidate genes with functional transcriptome annotations. It identifies enriched Biological Processes (BP), Cellular Components (CC), and Molecular Functions (MF), using R and Python to create 2D treemaps and interactive 3D visualizations of GO terms.
bioinformatics
bioinformatics-pipeline
treemap
enrichment-analysis
non-model-species
gene-ontology-terms
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Updated
Sep 15, 2024 - Python
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
survival-analysis
signaling-pathways
collagen
differential-gene-expression
metabolic-models
prostate-cancer
semi-supervised-clustering
gradient-boosted-machines
gene-ontology-terms
gene-set-enrichment-analysis
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Updated
Feb 26, 2024 - R
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