Merge branch 'develop' of https://github.com/talmolab/sleap into eliz… #58
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| # Run tests using built conda packages. | |
| name: Build Conda CI (no upload) | |
| # Run when changes to pip wheel | |
| on: | |
| push: | |
| paths: | |
| - ".conda/meta.yaml" | |
| - ".conda_mac/meta.yaml" | |
| - "setup.py" | |
| - "requirements.txt" | |
| - "dev_requirements.txt" | |
| - "environment_build.yml" | |
| - ".github/workflows/build_conda_ci.yml" | |
| # If RUN_BUILD_JOB is set to true, then RUN_ID will be overwritten to the current run id | |
| env: | |
| RUN_BUILD_JOB: true | |
| RUN_ID: 10713717594 # Only used if RUN_BUILD_JOB is false (to dowload build artifact) | |
| jobs: | |
| build: | |
| name: Build package from push (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["windows-2022", "ubuntu-22.04", "macos-14"] | |
| # https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstrategymatrixinclude | |
| include: | |
| # Use these variables as defaults | |
| - condarc: .conda/condarc.yaml | |
| - conda-folder: .conda | |
| - pyver: "3.10" | |
| - build-prefix: win | |
| - os: "ubuntu-22.04" | |
| build-prefix: linux | |
| # Use special condarc if macos | |
| - os: "macos-14" | |
| condarc: .conda_mac/condarc.yaml | |
| conda-folder: .conda_mac | |
| build-prefix: osx | |
| steps: | |
| # Setup | |
| - name: Checkout | |
| if: env.RUN_BUILD_JOB == 'true' | |
| uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| if: env.RUN_BUILD_JOB == 'true' | |
| uses: conda-incubator/setup-miniconda@v3.0.4 | |
| with: | |
| miniforge-version: latest | |
| condarc-file: ${{ matrix.condarc }} | |
| python-version: ${{ matrix.pyver }} | |
| environment-file: environment_build.yml | |
| activate-environment: sleap_ci | |
| conda-solver: "libmamba" | |
| - name: Print build environment info | |
| if: env.RUN_BUILD_JOB == 'true' | |
| shell: bash -l {0} | |
| run: | | |
| which python | |
| conda list | |
| pip freeze | |
| # Build conda package | |
| - name: Build conda package | |
| if: env.RUN_BUILD_JOB == 'true' | |
| shell: bash -l {0} | |
| run: | | |
| conda build ${{ matrix.conda-folder }} --output-folder build | |
| # Upload artifact "tests" can use it | |
| - name: Upload conda package artifact | |
| if: env.RUN_BUILD_JOB == 'true' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: sleap-build-${{ matrix.build-prefix }} | |
| path: build # Upload entire build directory | |
| retention-days: 1 | |
| overwrite: true | |
| tests: | |
| name: Run tests using package (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| needs: build # Ensure the build job has completed before starting this job. | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["windows-2022", "ubuntu-22.04", "macos-14"] | |
| # https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstrategymatrixinclude | |
| include: | |
| # Default values | |
| - build-prefix: win | |
| - build-suffix: 64 | |
| - test_args: pytest --durations=-1 tests/ | |
| - condarc: .conda/condarc.yaml | |
| - pyver: "3.10" | |
| - conda-channels: -c conda-forge -c nvidia -c anaconda | |
| # Ubuntu specific values | |
| - os: ubuntu-22.04 | |
| build-prefix: linux | |
| # Otherwise core dumped in github actions | |
| test_args: | | |
| sudo apt install xvfb libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xfixes0 | |
| sudo Xvfb :1 -screen 0 1024x768x24 </dev/null & | |
| export DISPLAY=":1" | |
| pytest tests -k 'not exclude_from_linux_pip_test' | |
| # Use special condarc if macos | |
| - os: "macos-14" | |
| build-prefix: osx | |
| build-suffix: arm64 | |
| condarc: .conda_mac/condarc.yaml | |
| conda-channels: -c conda-forge -c anaconda | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.pyver }} | |
| - name: Use current run id for conda package download | |
| shell: bash -l {0} | |
| if: env.RUN_BUILD_JOB == 'true' | |
| run: echo "RUN_ID=${{ github.run_id }}" >> $GITHUB_ENV | |
| # https://github.com/actions/download-artifact?tab=readme-ov-file#usage | |
| - name: Download conda package artifact | |
| uses: actions/download-artifact@v4 | |
| id: download | |
| with: | |
| name: sleap-build-${{ matrix.build-prefix }} | |
| path: build | |
| run-id: ${{ env.RUN_ID }} | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: List items in current directory | |
| run: | | |
| ls . | |
| ls -R build | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3.0.4 | |
| with: | |
| miniforge-version: latest | |
| condarc-file: ${{ matrix.condarc }} | |
| python-version: ${{ matrix.pyver }} | |
| conda-solver: "libmamba" | |
| - name: Create conda environment | |
| shell: bash -l {0} | |
| run: conda create sleap -y -n sleap_ci -c ./build ${{ matrix.conda-channels }} | |
| - name: Install packages for testing | |
| shell: bash -l {0} | |
| run: | | |
| conda activate sleap_ci | |
| pip install -r "dev_requirements.txt" | |
| # Note: "conda activate" does not persist across steps | |
| - name: Print environment info | |
| shell: bash -l {0} | |
| run: | | |
| conda activate sleap_ci | |
| conda info | |
| conda list | |
| pip freeze | |
| - name: Test package | |
| shell: bash -l {0} | |
| run: | | |
| conda activate sleap_ci | |
| ${{ matrix.test_args}} |