Added separate param for setting qval threshold for pathway analysis #1127
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1 error and 9 warnings
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Run pipeline with tests settings
Process returned exit code 1
Launched as "pytest --tag test --kwdof --git-aware --color=yes"
Launched at "/home/runner/work/rnadeseq/rnadeseq"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 08:03:25 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 08:05:44 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 08:07:57 GMT+0000 (Coordinated Universal Time)
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The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/wretry.action@v1.0.11, technote-space/get-diff-action@v4, actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: Wandalen/wretry.action@v1.0.11, actions/checkout@v3, technote-space/get-diff-action@v4, nf-core/setup-nextflow@v1, actions/setup-python@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Check if Dockerfile or Conda environment changed
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check if Dockerfile or Conda environment changed
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check if Dockerfile or Conda environment changed
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check if Dockerfile or Conda environment changed
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check if Dockerfile or Conda environment changed
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check if Dockerfile or Conda environment changed
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Check if Dockerfile or Conda environment changed
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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