Skip to content
@qbic-pipelines

QBiC (qbic-pipelines)

Bioinformatics analysis pipelines at QBiC

Popular repositories Loading

  1. rnadeseq rnadeseq Public

    Differential gene expression analysis and pathway analysis of RNAseq data

    Nextflow 32 21

  2. cellranger cellranger Public

    Nextflow pipeline wrapper for executing Cell Ranger

    Nextflow 12 2

  3. vcftomaf vcftomaf Public

    Nextflow pipeline to convert VCF files into MAF files.

    Nextflow 10 5

  4. icgc-featurecounts icgc-featurecounts Public

    Forked from apeltzer/IGCG-featureCounts

    A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch

    Nextflow 3 3

  5. metapep metapep Public

    From metagenomes to epitopes and beyond

    Nextflow 3 1

  6. variantmtb variantmtb Public

    Nextflow 3 1

Repositories

Showing 10 of 24 repositories
  • neuromriprep Public
    qbic-pipelines/neuromriprep’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 26, 2024
  • createpanelofnormals Public

    Create panel of normals for Mutect2 & CNVKit

    qbic-pipelines/createpanelofnormals’s past year of commit activity
    Nextflow 2 MIT 1 0 1 Updated Nov 25, 2024
  • vcftomaf Public

    Nextflow pipeline to convert VCF files into MAF files.

    qbic-pipelines/vcftomaf’s past year of commit activity
    Nextflow 10 MIT 5 1 1 Updated Nov 25, 2024
  • rnadeseq Public

    Differential gene expression analysis and pathway analysis of RNAseq data

    qbic-pipelines/rnadeseq’s past year of commit activity
    Nextflow 32 MIT 21 5 3 Updated Nov 25, 2024
  • lsmquant Public
    qbic-pipelines/lsmquant’s past year of commit activity
    Nextflow 0 MIT 0 3 0 Updated Nov 13, 2024
  • pipeline-docs Public

    Docs for QBiC pipelines

    qbic-pipelines/pipeline-docs’s past year of commit activity
    2 12 0 2 Updated Nov 8, 2024
  • variantmtb Public
    qbic-pipelines/variantmtb’s past year of commit activity
    Nextflow 3 MIT 1 6 0 Updated Oct 11, 2024
  • querynator Public
    qbic-pipelines/querynator’s past year of commit activity
    Python 1 MIT 6 5 0 Updated Oct 10, 2024
  • intersectvcfs Public

    Intersects Strelka2 and Mutect2 VCF files

    qbic-pipelines/intersectvcfs’s past year of commit activity
    Nextflow 1 MIT 1 0 0 Updated Apr 5, 2024
  • root-tissue-segmentation-core Public Forked from Waseju/root-tissue-segmentation

    Project to automate the segment the root tissue of A. thaliana into 5 different classes, includes automated HPO.

    qbic-pipelines/root-tissue-segmentation-core’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Feb 23, 2024
View all repositories