Get raw gene count tables from either Salmon and RSEM analysis #62
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| name: nf-core branch protection | |
| # This workflow is triggered on PRs to master branch on the repository | |
| # It fails when someone tries to make a PR against the nf-core `master` branch instead of `dev` | |
| on: | |
| pull_request_target: | |
| branches: [master] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # PRs to the nf-core repo master branch are only ok if coming from the nf-core repo `dev` or any `patch` branches | |
| - name: Check PRs | |
| if: github.repository == 'qbic-pipelines/rnadeseq' | |
| run: | | |
| "{ [[ ${{github.event.pull_request.head.repo.full_name }} == qbic-pipelines/rnadeseq ]] && [[ $GITHUB_HEAD_REF = "dev" ]]; } || [[ $GITHUB_HEAD_REF == "patch" ]]" | |
| # If the above check failed, post a comment on the PR explaining the failure {%- raw %} | |
| # NOTE - this doesn't currently work if the PR is coming from a fork, due to limitations in GitHub actions secrets | |
| - name: Post PR comment | |
| if: failure() | |
| uses: mshick/add-pr-comment@b8f338c590a895d50bcbfa6c5859251edc8952fc # v2 | |
| with: | |
| message: | | |
| ## This PR is against the `master` branch :x: | |
| * Do not close this PR | |
| * Click _Edit_ and change the `base` to `dev` | |
| * This CI test will remain failed until you push a new commit | |
| --- | |
| Hi @${{ github.event.pull_request.user.login }}, | |
| It looks like this pull-request is has been made against the [${{github.event.pull_request.head.repo.full_name }}](https://github.com/${{github.event.pull_request.head.repo.full_name }}) `master` branch. | |
| The `master` branch on nf-core repositories should always contain code from the latest release. | |
| Because of this, PRs to `master` are only allowed if they come from the [${{github.event.pull_request.head.repo.full_name }}](https://github.com/${{github.event.pull_request.head.repo.full_name }}) `dev` branch. | |
| You do not need to close this PR, you can change the target branch to `dev` by clicking the _"Edit"_ button at the top of this page. | |
| Note that even after this, the test will continue to show as failing until you push a new commit. | |
| Thanks again for your contribution! | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| allow-repeats: false {%- endraw %} |