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28 followers · 14 following
  • University of Wisconsin - Madison
  • Madison, WI, USA
  • LinkedIn in/patriciatran

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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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@McMahonLab @AnantharamanLab @AquaticDataSciOpenSci @UW-Madison-Bacteriology-Bioinformatics

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patriciatran/README.md

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Welcome! 👋

My name is Patricia Tran and I'm a Bioinformatics Scientist & Research Cyberinfrastructure Specialist for the Department of Bacteriology at UW-Madison.

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  1. UW-Madison-Bacteriology-Bioinformatics/chtc-containers UW-Madison-Bacteriology-Bioinformatics/chtc-containers Public

    This repos contains information how to build, test, and run containers on CHTC. It contains examples of definition files for several bioinformatics softwares.

  2. UW-Madison-Bacteriology-Bioinformatics/Computing UW-Madison-Bacteriology-Bioinformatics/Computing Public

    A guide to getting started with computing for microbiology analyses at UW-Madison

    1

  3. MAG_pipeline MAG_pipeline Public

    🐍 🧬 Turning my metagenomic MAG (metagenome-assembled genome) pipeline into a snakemake pipeline for increased reproducibility and scalability.

    Python 3

  4. LakeMendota-PairedOmics LakeMendota-PairedOmics Public

    R code used to clean, process, merge, and visualize data related to one of my thesis chapters.

    R 2

  5. LakeTanganyika LakeTanganyika Public

    Code to generate figures/analyses for the Lake Tanganyika project.

    R 2

  6. AnantharamanLab/METABOLIC AnantharamanLab/METABOLIC Public

    A scalable high-throughput metabolic and biogeochemical functional trait profiler

    Perl 178 45