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@McMahonLab

UW-Madison McMahon Lab

Organization for Trina McMahon's Lab at UW-Madison

Popular repositories Loading

  1. TaxAss TaxAss Public

    16S taxonomy assignment using an ecosystem-specific database.

    HTML 15 7

  2. FEET FEET Public

    Finding Extracellular Electron Transfer proteins using FeGenie, HMMs, and cytochrome motifs.

    Python 4

  3. OMD-TOIL OMD-TOIL Public

    Analysis of OMD-TOIL metatranscriptomic data

    HTML 3 4

  4. MAGstravaganza MAGstravaganza Public

    Investigation of how freshwater nutrient cycling is linked at the organism level

    R 3 2

  5. FWMFG FWMFG Public

    Freshwater microbial field guide

    2 3

  6. Scripts Scripts Public

    Scripts, protocols, and workflows for computational analyses.

    Python 2 4

Repositories

Showing 10 of 12 repositories
  • TaxAss Public

    16S taxonomy assignment using an ecosystem-specific database.

    McMahonLab/TaxAss’s past year of commit activity
    HTML 15 GPL-3.0 7 4 0 Updated Feb 13, 2023
  • Rdump Public

    An unrelenting wasteland of user-UN-friendly R scripts and block code

    McMahonLab/Rdump’s past year of commit activity
    R 0 0 0 0 Updated Dec 12, 2022
  • FEET Public

    Finding Extracellular Electron Transfer proteins using FeGenie, HMMs, and cytochrome motifs.

    McMahonLab/FEET’s past year of commit activity
    Python 4 0 0 0 Updated Jan 19, 2022
  • EBPR_pH_logger Public

    Code for running Arduino pH logger and analyzing data

    McMahonLab/EBPR_pH_logger’s past year of commit activity
    C++ 0 0 0 0 Updated Mar 17, 2021
  • geodes Public

    Diel transcriptomics of freshwater lakes

    McMahonLab/geodes’s past year of commit activity
    HTML 2 1 0 0 Updated Aug 16, 2019
  • FWMFG Public

    Freshwater microbial field guide

    McMahonLab/FWMFG’s past year of commit activity
    2 3 0 0 Updated Jun 8, 2019
  • MAGstravaganza Public

    Investigation of how freshwater nutrient cycling is linked at the organism level

    McMahonLab/MAGstravaganza’s past year of commit activity
    R 3 2 0 0 Updated Dec 10, 2018
  • blast2ani Public

    Garcia, S. L., Stevens, S. L. R., Crary, B., Martinez-Garcia, M., Stepanauskas, R., Woyke, T., Tringe, S. G., Andersson, S., Bertilsson, Malmstrom, R. R., McMahon, K. D. (ISMEJ). Genome level exploration of abundant and uncultivated freshwater bacteria reveals distinct and dynamic populations.

    McMahonLab/blast2ani’s past year of commit activity
    R 1 GPL-3.0 3 0 0 Updated Jan 18, 2018
  • OMD-TOIL Public

    Analysis of OMD-TOIL metatranscriptomic data

    McMahonLab/OMD-TOIL’s past year of commit activity
    HTML 3 4 2 0 Updated Aug 7, 2017
  • North_Temperate_Lakes-Microbial_Observatory Public

    Data and scripts associated with the McMahon Lab's North Temperate Lakes - Microbial Observatory

    McMahonLab/North_Temperate_Lakes-Microbial_Observatory’s past year of commit activity
    R 2 1 0 0 Updated Jun 29, 2017
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