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Update igenomes config #77

Merged
merged 14 commits into from
Sep 27, 2023
Merged

Update igenomes config #77

merged 14 commits into from
Sep 27, 2023

Commits on Sep 26, 2023

  1. Update igenomes config

    @nictru
    nictru committed Sep 26, 2023
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  2. Add final newLine

    @nictru
    nictru committed Sep 26, 2023
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  3. Fix problem with software version dumping

    @nictru
    nictru committed Sep 26, 2023
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  4. Remove default gtf parameter value 

    This solves the problem of overwritten gtf values, if they are set via igenomes.
    @nictru
    nictru committed Sep 26, 2023
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  5. Implement caching of test data in github action

    @nictru
    nictru committed Sep 26, 2023
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  6. Revert "Remove default gtf parameter value" 

    This reverts commit 5e3e123.
    @nictru
    nictru committed Sep 26, 2023
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  7. Fix problematic reference default values

    @nictru
    nictru committed Sep 26, 2023
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  8. Fix linting errors

    @nictru
    nictru committed Sep 26, 2023
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  9. Decrease minimum nextflow version

    @nictru
    nictru committed Sep 26, 2023
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  10. Fix docker image reference in TARGETSCAN_DATABASE

    @nictru
    nictru committed Sep 26, 2023
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  11. Switch to own mirror of the ubuntu base image

    @nictru
    nictru committed Sep 26, 2023
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Commits on Sep 27, 2023

  1. Format test configs

    @nictru
    nictru committed Sep 27, 2023
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  2. Add missing igenomes config fields

    @nictru
    nictru committed Sep 27, 2023
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  3. Remove unnecessary igenome configs

    @nictru
    nictru committed Sep 27, 2023
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