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Add MOCMC #80

Merged
merged 150 commits into from
Jun 8, 2022
Merged

Add MOCMC #80

merged 150 commits into from
Jun 8, 2022

Commits on Feb 18, 2022

  1. First cut

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  2. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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Commits on Feb 22, 2022

  1. Cleanup

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Commits on Feb 23, 2022

  1. Working on packing tilPi and sending it around

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  2. Runs radiation_advection

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Commits on Mar 1, 2022

  1. backing up

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Commits on Mar 2, 2022

  1. Working on MOCMC, about to try fixing Mesh swarm BCs

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Commits on Mar 3, 2022

  1. Refining

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Commits on Mar 5, 2022

  1. Working on MOCMC

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Commits on Mar 6, 2022

  1. Prepared for pij calc

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  2. Fix species indexing on itil

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Commits on Mar 7, 2022

  1. Add transport to mocmc particles

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  2. Working

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Commits on Mar 8, 2022

  1. Merge remote-tracking branch 'origin' into brryan/add_mocmc

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  2. Merge branch 'brryan/add_mocmc' of github.com:lanl/phoebus into brrya… 

    …n/add_mocmc
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  3. adding code to assign samples a dOmega and compute eddington

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  4. normalize the 2nd moment

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  5. normalize the 2nd moment right

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  6. Make particle sampling work

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  7. new singularity opac

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Commits on Mar 9, 2022

  1. Working

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  2. About to merge in jdolence recon changes

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  3. Merge branch 'brryan/add_mocmc' into jdolence/mocmc_edd

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  4. Merge pull request #87 from lanl/jdolence/mocmc_edd 

    adding code to assign samples a dOmega and compute eddington
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  5. Compiles and runs

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  6. opacity averaging

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  7. First cut of MOCMC residual

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  8. 2D rootfind :(

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Commits on Mar 10, 2022

  1. Actually initialize samples with thermal values

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  2. Working on rootfind

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Commits on Mar 14, 2022

  1. working

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Commits on Mar 15, 2022

  1. Add script for getting 0D thermalization solutions

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Commits on Mar 16, 2022

  1. Add pre-timestep boundary communication

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  2. Merge remote-tracking branch 'origin/brryan/add_mocmc' into brryan/ad… 

    …d_mocmc
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Commits on Mar 22, 2022

  1. Working out how to deal with ispec issue

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  2. Bizarre error with c2p right now

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Commits on Mar 23, 2022

  1. compiles

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  2. Cleaned up comments

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  3. Formatting

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  4. Weird git error

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  5. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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  6. Real version of parthenon

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  7. Working to solve my bvals bug

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  8. submodule

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  9. Add lfroberts suggestion for inherited type checking

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  10. change loop pattern

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  11. Formatting

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Commits on Mar 24, 2022

  1. Removed EDDINGTON_KNOWN as a template parameter

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  2. Update parthenon

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Commits on Apr 5, 2022

  1. merge

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Commits on Apr 6, 2022

  1. Remove print statements

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  2. A bit of progress in mocmc interactions

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  3. cleanup

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Commits on Apr 7, 2022

  1. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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  2. Scattering working

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  3. Integrate over frequency correctly

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Commits on Apr 11, 2022

  1. old version

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  2. Merge remote-tracking branch 'origin/brryan/add_mocmc' into brryan/ad… 

    …d_mocmc
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  3. Interpolating intensities properly

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Commits on Apr 12, 2022

  1. Working on mocmc

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  2. Update singularity-opac

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Commits on Apr 13, 2022

  1. Working on getting units right

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  2. Latest singularity-opac

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  3. About to clean up

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  4. Working on this

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Commits on Apr 14, 2022

  1. Merge remote-tracking branch 'origin' into brryan/add_mocmc

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  2. Merge branch 'brryan/add_mocmc' of github.com:lanl/phoebus into brrya… 

    …n/add_mocmc
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  3. Modifying units for adv test

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  4. Workign

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  5. moment method back to working

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  6. Working on this

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Commits on Apr 19, 2022

  1. Got units working

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  2. Add MOCMC particle counter

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  3. Formatting

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  4. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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  5. Back to cfm12

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  6. Cleanup

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  7. Working on cleaning things up

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Commits on Apr 21, 2022

  1. Cleaning up

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  2. Working

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Commits on Apr 25, 2022

  1. Response to code review

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  2. Formatting

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  3. Formatting

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  4. Switch to GetFourVelocity

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Commits on Apr 28, 2022

  1. change intepr filename

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Commits on Apr 29, 2022

  1. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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  2. Merge remote-tracking branch 'origin/jmm/lower-d-interp' into brryan/… 

    …add_mocmc
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  3. attempted fix

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  4. Merge remote-tracking branch 'origin/jmm/lower-d-interp' into brryan/… 

    …add_mocmc
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  5. Merge remote-tracking branch 'origin/jmm/lower-d-interp' into brryan/… 

    …add_mocmc
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  6. Merge remote-tracking branch 'origin/jmm/lower-d-interp' into brryan/… 

    …add_mocmc
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  7. Merge remote-tracking branch 'origin/jmm/lower-d-interp' into brryan/… 

    …add_mocmc
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  8. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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  9. Working on equilibration analysis

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  10. copyright

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Commits on May 2, 2022

  1. Working on consistent data reading

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Commits on May 3, 2022

  1. Spin out phoebus package

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Commits on May 5, 2022

  1. Working on this

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Commits on May 10, 2022

  1. Switch to mean opacities

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  2. Formatting

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Commits on May 12, 2022

  1. Switching to scalefree rad physics

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  2. Trying to identify lack of energy conservation

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Commits on May 13, 2022

  1. Still trying to debug

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Commits on May 16, 2022

  1. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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  2. MOCMC conserving atm

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  3. Found the line that breaks things

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  4. Fix interpolation stencil issue

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  5. Merge remote-tracking branch 'origin/brryan/add_mocmc' into brryan/ad… 

    …d_mocmc
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Commits on May 17, 2022

  1. fix phi domain bug

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  2. Cleaned up print statements

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  3. Plot_eq working for rad again

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Commits on May 18, 2022

  1. wrong equilib temp

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  2. Looks like phoebus is equilibrating to the wrong temperature

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  3. MOCMC also works for eql test

    @brryan
    brryan committed May 18, 2022
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  4. Add tests

    @brryan
    brryan committed May 18, 2022
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  5. Fix bugs and upgold

    @brryan
    brryan committed May 18, 2022
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  6. Formatting

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    brryan committed May 18, 2022
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  7. Remove old debug code

    @brryan
    brryan committed May 18, 2022
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  8. update CI

    @brryan
    brryan committed May 18, 2022
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  9. update CI

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    brryan committed May 18, 2022
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Commits on May 19, 2022

  1. Fix bug with non-rad runs

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    brryan committed May 19, 2022
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  2. Some fixes from review comments

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    brryan committed May 19, 2022
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Commits on May 20, 2022

  1. Implement LFR approach to constant code_constants

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    brryan committed May 20, 2022
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  2. Fixed bug with nu units but MC still not working

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    brryan committed May 20, 2022
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  3. still unclear why MC is broken

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    brryan committed May 20, 2022
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Commits on May 26, 2022

  1. backup

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    brryan committed May 26, 2022
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  2. I think I fixed the bug

    @brryan
    brryan committed May 26, 2022
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  3. About to move frequency unit conversion around

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    brryan committed May 26, 2022
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  4. Switched frequency around, upgolded

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    brryan committed May 26, 2022
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  5. Formatting

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    brryan committed May 26, 2022
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  6. Merge remote-tracking branch 'origin/main' into brryan/add_mocmc

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    brryan committed May 26, 2022
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Commits on May 27, 2022

  1. bad merge

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    brryan committed May 27, 2022
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Commits on May 31, 2022

  1. Move to latest parthenon brryan/TEMP_PHOEBUS_SUPPORT

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    brryan committed May 31, 2022
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  2. SetPrecise -> SetReal

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    brryan committed May 31, 2022
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  3. +/- issue I may have introduced recently

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    brryan committed May 31, 2022
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  4. Make max frac error calc more robust

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    brryan committed May 31, 2022
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  5. Update parthenon

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    brryan committed May 31, 2022
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  6. upgold linear modes because of old setreal precision issue

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    brryan committed May 31, 2022
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Commits on Jun 1, 2022

  1. Remove printfs

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    brryan committed Jun 1, 2022
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Commits on Jun 3, 2022

  1. Don't output flux div for fluid if fluid isnt active

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    brryan committed Jun 3, 2022
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  2. Merge remote-tracking branch 'origin/brryan/fix_rad_gpu' into brryan/… 

    …add_mocmc
    @brryan
    brryan committed Jun 3, 2022
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  3. Fix host/gpu issue and update to latest parth preview

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    brryan committed Jun 3, 2022
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  4. Merge remote-tracking branch 'origin/brryan/add_mocmc' into brryan/ad… 

    …d_mocmc
    @brryan
    brryan committed Jun 3, 2022
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  5. Actually update parthenon submodule

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    brryan committed Jun 3, 2022
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  6. Merge remote-tracking branch 'origin/brryan/add_mocmc' into brryan/ad… 

    …d_mocmc
    @brryan
    brryan committed Jun 3, 2022
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  7. update TEMP_PHOEBUS

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    brryan committed Jun 3, 2022
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  8. Merge remote-tracking branch 'origin/brryan/add_mocmc' into brryan/ad… 

    …d_mocmc
    @brryan
    brryan committed Jun 3, 2022
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  9. Formatting

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    brryan committed Jun 3, 2022
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Commits on Jun 8, 2022

  1. Remove printfs

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    brryan committed Jun 8, 2022
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  2. Merge branch 'brryan/add_mocmc' of github.com:lanl/phoebus into brrya… 

    …n/add_mocmc
    @brryan
    brryan committed Jun 8, 2022
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