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24 Open 16 Closed
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Issues list

Refactor trimming and filtering DSL2 Prioritize for DSL2 implementation
#49 opened Oct 28, 2024 by cjfields
PacBio initial read counts and cutadapt-based trimming details missing from read tracking bug Something isn't working DSL2 Prioritize for DSL2 implementation high priority Needs fixin'!
#48 opened Aug 23, 2024 by cjfields
Update fluidigm-run.py to include sample sheet for PacBio DSL2 Prioritize for DSL2 implementation
#47 opened Jul 18, 2024 by NeginValizadegan
1
Add options for priors
#46 opened Jun 15, 2024 by cjfields
2
Address pooling when doing chimera detection DSL2 Prioritize for DSL2 implementation
#45 opened Jun 15, 2024 by cjfields
Initial trimming steps DSL2 Prioritize for DSL2 implementation
#44 opened Mar 11, 2024 by cjfields
4 tasks
v2
@cjfields
Initial QC steps DSL2 Prioritize for DSL2 implementation
#43 opened Mar 11, 2024 by cjfields
3 of 5 tasks
v2
Address warnings DSL2 Prioritize for DSL2 implementation
#42 opened Jan 25, 2024 by cjfields
DSL1 is no longer supported high priority Needs fixin'!
#41 opened Nov 9, 2023 by cjfields
Documentation cleanup
#40 opened Jun 19, 2023 by cjfields
1
Set up Dockstore
#39 opened Dec 22, 2022 by cjfields
1 of 4 tasks
@cjfields @ziyaadparker
1
Update Docker Github actions bug Something isn't working DSL2 Prioritize for DSL2 implementation high priority Needs fixin'!
#38 opened Jul 8, 2022 by cjfields
1
Shoreline data without primers appear to be in either orientation low priority needs documentation Not necessarily a fix, but should be documented for clarity
#36 opened Apr 19, 2022 by cjfields
5
Reorganizing output directories DSL2 Prioritize for DSL2 implementation
#35 opened Feb 28, 2022 by cjfields
1
Generation of large matrices and data frames takes forever
#34 opened Feb 14, 2022 by cjfields
2
Overall name changes DSL2 Prioritize for DSL2 implementation
#33 opened Jan 24, 2022 by cjfields
3
Sporadic Docker build issues low priority
#32 opened Jan 14, 2022 by cjfields
Implement alternative NovaSeq error models DSL2 Prioritize for DSL2 implementation
#31 opened Nov 30, 2021 by cjfields
Add software and R module versions DSL2 Prioritize for DSL2 implementation enhancement New feature or request
#29 opened Oct 26, 2021 by cjfields
Add Figaro? documentation Improvements or additions to documentation enhancement New feature or request needs documentation Not necessarily a fix, but should be documented for clarity
#18 opened Jun 16, 2021 by cjfields
1
DSL2 migration DSL2 Prioritize for DSL2 implementation enhancement New feature or request
#14 opened May 8, 2021 by cjfields
2
Scaling some processes based on sample # enhancement New feature or request
#12 opened Dec 17, 2020 by cjfields
Add q2-feature-classifier as an option DSL2 Prioritize for DSL2 implementation enhancement New feature or request
#9 opened Aug 19, 2020 by cjfields
1
Make pipeline work for 454 data DSL2 Prioritize for DSL2 implementation enhancement New feature or request
#6 opened May 19, 2020 by kifeonu
6
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