Skip to content

Issues: gis-rpd/pipelines

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

62 Open 86 Closed
62 Open 86 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[shotgun-metagenomics] Option to switch off humann2 using the config file
#148 opened Dec 17, 2018 by lch14forever
1
Enable use of project id on NSCC
#147 opened Mar 21, 2018 by andreas-wilm 2018-01
@andreas-wilm
--frag-len and --frag-len-sd of wafergen-scrna
#146 opened Mar 13, 2018 by GIS-liuxl
Chipseq: Allow multisample input enhancement
#145 opened Feb 13, 2018 by andreas-wilm
Vipr3: Visualize reference insertion in assembly in variant plots enhancement
#144 opened Feb 13, 2018 by andreas-wilm
Vipr3: Reformat input reference enhancement
#143 opened Feb 8, 2018 by andreas-wilm
@andreas-wilm
1
Indicate per sample success in multisample setup enhancement
#142 opened Jan 30, 2018 by andreas-wilm
MultiQC to bcl2fastq enhancement
#141 opened Jan 29, 2018 by andreas-wilm 2018-01
Update KrakenDB enhancement
#140 opened Jan 29, 2018 by andreas-wilm 2018-01
Batch submission for wafergen pipeline RNASeqQC
#138 opened Nov 2, 2017 by justinjj24
@andreas-wilm @justinjj24
STAR-RSEM: RNASeQC option and -noDoC changeable enhancement
#137 opened Nov 1, 2017 by andreas-wilm 2018-01
@andreas-wilm
Add GERMS-WGS equivalent enhancement
#135 opened Sep 26, 2017 by andreas-wilm 2018-01
Add Speedseq enhancement
#134 opened Sep 26, 2017 by andreas-wilm 2018-01
Add Strelka2 enhancement
#133 opened Sep 26, 2017 by andreas-wilm 2018-01
Add CI tests enhancement
#132 opened Sep 19, 2017 by andreas-wilm
@andreas-wilm
evaluate use of igenomes enhancement
#131 opened Sep 19, 2017 by andreas-wilm 2018-01
@andreas-wilm
Add user option to make small jobs local enhancement
#130 opened Sep 8, 2017 by andreas-wilm
@andreas-wilm
Genomes needs documentation enhancement
#129 opened Sep 6, 2017 by andreas-wilm 2018-01
@justinjj24
Set Djava.io.tmpdir in GATK and others to something useful and other than /tmp in modules enhancement
#128 opened Sep 3, 2017 by andreas-wilm
1
Try scatter/gather BSQR
#127 opened Aug 31, 2017 by andreas-wilm 2018-01
Wafergen: Replace scRNApipe enhancement
#125 opened Aug 28, 2017 by andreas-wilm 2018-01
Split bcl2fastq off entirely from repo enhancement
#124 opened Aug 25, 2017 by andreas-wilm 2018-01
Add benchmark stats and logging enhancement
#123 opened Aug 23, 2017 by andreas-wilm 2018-01
@andreas-wilm
GATK: Upgrade to 3.8 enhancement
#121 opened Aug 21, 2017 by andreas-wilm 2018-01
@andreas-wilm
1
shotgun-metagenomics: decontamination rate enhancement
#120 opened Aug 18, 2017 by andreas-wilm 2018-01
@andreas-wilm
ProTip! Exclude everything labeled bug with -label:bug.