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42 Open 148 Closed
42 Open 148 Closed
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Issues list

Can you add the variance explained by PCs in the PCA plots?
#198 opened Oct 30, 2024 by ladveirm
Question about filtering conditions with MSstats quantification
#197 opened Jul 11, 2023 by mstaniak
2
Could you please add MSStats removeFewMeasurements argument in the config.yaml?
#196 opened Nov 3, 2022 by weixiandeng
Feature request: allow duplications for artmsMapUniprot2Entrez
#195 opened Jul 5, 2022 by vivaciousvijaya
Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'select': object 'org.Mm.eg.db' not found 2 - Working <= 5 Fix fix stuff
#194 opened Jun 12, 2022 by vivaciousvijaya
Question about SILAC data analysis
#192 opened Jan 26, 2022 by giuliof95
Problem about user-defined modification type
#191 opened Oct 28, 2021 by Wang-Xuejun
8
Error: Assigned data dfdc.final[[x]] - dfdc.final[[y]] must be compatible with existing data
#190 opened Sep 13, 2021 by jfertaj
11
question about user modification 2 - Working <= 5
#189 opened Aug 11, 2021 by hemingwang
14
Deprecate protein complex enrichment analysis deprecate Deprecate a feature
#188 opened Jul 29, 2021 by biodavidjm
Replace gProfileR by gprofiler2 Fix fix stuff
#187 opened Jul 29, 2021 by biodavidjm
@biodavidjm
Remove negative values from ModelQC
#186 opened Jul 27, 2021 by biodavidjm
Fix: message of number of Intensity values = 0 to do
#185 opened Jul 26, 2021 by biodavidjm
@biodavidjm
Evaluate dependency on package factoextra
#183 opened Jul 17, 2021 by biodavidjm
artmsEvidenceToSaintExpress: MISSING LENGTHS WITH THE MEDIAN LENGTH FROM THE DATASET
#173 opened Mar 26, 2021 by Skourtis
1
Handling of missing values in PCA plots 1 - Ready
#171 opened Jan 28, 2021 by bpolacco
3
Add warning text for PCA plot 4 - Done
#170 opened Jan 5, 2021 by biodavidjm
New format of modifications from MaxQuant cause artmsProtein2SiteConversion to fail 4 - Done enhancement Fix fix stuff v1.6 Release v1.6
#166 opened Sep 18, 2020 by bpolacco
4
Add checkpoint to validate naming rules of the keys file 2 - Working <= 5 enhancement v1.6 Release v1.6
#163 opened Jul 15, 2020 by biodavidjm
@biodavidjm
Add plot of distribution of Intensities (pre and post normalization) 1 - Ready feature new feature v1.6 Release v1.6
#161 opened May 14, 2020 by biodavidjm
Upgrade gprofiler to gprofiler2 0 - Backlog
#158 opened Apr 23, 2020 by biodavidjm
Add 2d-density mz/rt map to QualityControlBasic 1 - Ready enhancement v1.6 Release v1.6
#150 opened Apr 4, 2020 by biodavidjm
org.*.eg.db packages other than mouse/human are not in namespace 2 - Working <= 5 bug v1.6 Release v1.6
#149 opened Apr 2, 2020 by bpolacco
@biodavidjm
1
Plots: print gene name when available instead of protein code 1 - Ready enhancement v1.6 Release v1.6
#148 opened Mar 5, 2020 by biodavidjm
artmsQualityControlSummaryExtended() does not handle properly technical replicates 0 - Backlog bug
#143 opened Feb 12, 2020 by biodavidjm
ProTip! Adding no:label will show everything without a label.