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85 Open 34 Closed
85 Open 34 Closed
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Issues list

Naming standards for inputs to algorithms
#196 opened Nov 19, 2024 by oliverfanderson
1
Remove support for secondary node that uses the filename as the node attribute
#192 opened Oct 31, 2024 by agitter
MEO Node ID Error
#189 opened Oct 10, 2024 by ntalluri
3
InvalidIndexError when running ml code
#188 opened Oct 7, 2024 by ntalluri
4
Possible bug loading numeric node identifiers
#186 opened Sep 16, 2024 by agitter
Generalize aggregation per algorithm to support empty pathways with multiple parameter combinations
#184 opened Sep 9, 2024 by ntalluri
Document and automate parts of release process
#180 opened Aug 23, 2024 by agitter
@jhiemstrawisc
1
Add EGFR test case for evaluation code
#178 opened Aug 18, 2024 by agitter
Support running an algorithm multiple times with the same parameter combination
#174 opened Jul 23, 2024 by agitter
Integrate spras-benchmarking
#173 opened Jul 20, 2024 by agitter
Cytoscape workflow error on 1000 runs
#171 opened Jul 17, 2024 by D3xtersLab
1
Snakemake integration testing
#165 opened Jun 26, 2024 by agitter
D’or algorithm Pathway reconstruction algorithm to add to SPRAS
#162 opened Jun 15, 2024 by agitter
NetMix2 algorithm Pathway reconstruction algorithm to add to SPRAS
#157 opened May 7, 2024 by agitter
NetMix algorithm Pathway reconstruction algorithm to add to SPRAS
#156 opened May 7, 2024 by agitter
Support hypergraphs and hypergraph algorithms
#155 opened May 7, 2024 by agitter
5
State of the Interactomes: an evaluation of molecular networks for generating biological insights
#154 opened May 7, 2024 by agitter
Add parameter summary column to summary table
#153 opened Mar 6, 2024 by agitter
Improving Snakemake clean rule
#151 opened Mar 4, 2024 by agitter
Best practices for pushing images to the DockerHub organization
#147 opened Feb 20, 2024 by annaritz
1
ModulOmics algorithm Pathway reconstruction algorithm to add to SPRAS
#141 opened Dec 8, 2023 by agitter
pyPARAGON algorithm Pathway reconstruction algorithm to add to SPRAS
#140 opened Dec 8, 2023 by agitter
Additional interactome pre-processing functions
#139 opened Dec 3, 2023 by agitter
MEO throws IllegalStateException: Cannot load the stored orientation because no orientation has been saved
#138 opened Dec 1, 2023 by agitter
DOMINO fails in Singularity during local testing bug Something isn't working
#137 opened Nov 29, 2023 by agitter
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