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@Reed-CompBio

Reed College Computational Biology

computational biology courses and projects at Reed College

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  1. Graphery Graphery Public

    A graph tutorial website

    Python 7 3

  2. spras spras Public

    Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)

    Python 11 20

  3. pathway-reconciliation pathway-reconciliation Public

    Python 2

  4. growing-dags growing-dags Public

    Python

  5. protein-weaver protein-weaver Public

    A web interface for ontology-based protein network visualization.

    JavaScript 2 5

Repositories

Showing 10 of 32 repositories
  • spras Public

    Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)

    Reed-CompBio/spras’s past year of commit activity
    Python 11 MIT 20 85 10 Updated Nov 23, 2024
  • BowTieBuilder-Algorithm Public

    This repository contains an implementation of the BowTieBuilder Algorithm.

    Reed-CompBio/BowTieBuilder-Algorithm’s past year of commit activity
    Jupyter Notebook 0 2 3 0 Updated Nov 20, 2024
  • protein-weaver Public

    A web interface for ontology-based protein network visualization.

    Reed-CompBio/protein-weaver’s past year of commit activity
    JavaScript 2 GPL-3.0 5 25 7 Updated Nov 18, 2024
  • protein-function-prediction Public

    A tool to predict protein functions (Gene Ontology) via protein-protein and ontology networks

    Reed-CompBio/protein-function-prediction’s past year of commit activity
    Python 1 0 2 0 Updated Oct 9, 2024
  • spras-benchmarking Public

    Benchmarking datasets for the SPRAS project

    Reed-CompBio/spras-benchmarking’s past year of commit activity
    Jupyter Notebook 0 MIT 5 0 5 Updated Sep 22, 2024
  • ResponseNet Public

    Implementation of the ResponseNet algorithm

    Reed-CompBio/ResponseNet’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 26, 2024
  • github-tutorial Public
    Reed-CompBio/github-tutorial’s past year of commit activity
    0 0 0 0 Updated Jun 6, 2024
  • growing-dags Public
    Reed-CompBio/growing-dags’s past year of commit activity
    Python 0 0 0 0 Updated Sep 11, 2023
  • nmii-contractility-regulators Public
    Reed-CompBio/nmii-contractility-regulators’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 5, 2023
  • random-walk-with-restart Public
    Reed-CompBio/random-walk-with-restart’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 17, 2023
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