Updated Yeast Project #4
Conversation
Updated README to indicate run order for the files, created raw & processed data folders, added my SPRAS config file and created yaml file for my conda environment with required packages
There was a problem hiding this comment.
Including the complete set of packages and specific versions is good for documentation. That type of environment file is usually hard to re-install on a new machine with a different operating system. We could work on a minimal environment file that is more portable.
There is a lot of discussion of that here: https://stackoverflow.com/questions/39280638/how-to-share-conda-environments-across-platforms
The accepted answer is to create an environment file by hand that lists the important packages you use and their versions. There is also conda env export --from-history that exports only packages you installed, which may or may not be helpful depending on how you set up the environment.
Co-authored-by: Anthony Gitter <agitter@users.noreply.github.com>
There was a problem hiding this comment.
It looks like most of the initial review comments have been addressed. A few remaining things I noticed are:
- the version of
matplotlib_vennso we can add it to the environment file - a Raw_data section in the readme with links to the original file sources
- include the dummy file in Raw_data
There could be other small things I missed.
Updated Readme file with file run order, more details and environment setup. Create raw & processed data folders. Added my SPRAS config file and saved conda environment and required packages as a yaml file.