https://github.com/FrancisCrickInstitute/plaque_assay/wiki
Publications using this analysis pipeline:
- Neutralising antibody activity against SARS-CoV-2 VOCs B. 1.617. 2 and B. 1.351 by BNT162b2 vaccination. The Lancet, 2021
- Ability of AZD1222 vaccination to elicit neutralising antibodies against SARS-CoV-2 VOC B. 1.617. 2 Delta. The Lancet. 2021
- AZD1222-induced neutralising antibody activity against SARS-CoV-2 Delta VOC. The Lancet. 2021
- Reduced antibody cross-reactivity following infection with B. 1.1. 7 than with parental SARS-CoV-2 strains. eLife. 2021
- Neutralising antibodies after COVID-19 vaccination in UK haemodialysis patients. The Lancet. 2021
- Three-dose vaccination elicits neutralising antibodies against omicron. The Lancet. 2022
- Strong peak immunogenicity but rapid antibody waning following third vaccine dose in older residents of care homes. Nature Aging. 2023
- CD4+ and CD8+ T cell and antibody correlates of protection against Delta vaccine breakthrough infection: A nested case-control study within the PITCH study. medRxiv. 2023
- Sotrovimab restores neutralization against current Omicron subvariants in patients with blood cancer. Cancer Cell. 2023
- Dichotomy of neutralizing antibody, B cell and T cell responses to SARS-CoV-2 vaccination and protection in healthy adults. bioRXiv. 2023
# in the plaque_assay directory
pip install .or
pip install git+ssh://git@github.com/FrancisCrickInstitute/plaque_assay