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The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 12

  2. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  3. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  4. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 5

  5. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

  6. cbias-napari cbias-napari Public

    Introduction to Napari training course

    Jupyter Notebook 5 1

Repositories

Showing 10 of 131 repositories
  • nextflow-modules Public

    Contains managed modules and subworkflows for Nextflow that can be installed into pipelines

    FrancisCrickInstitute/nextflow-modules’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 28, 2024
  • CBIAS_napari_workshop_2024 Public

    CBIAS napari workshop 2024 - run as part of the Crick Bioimage Analysis Symposium 2024

    FrancisCrickInstitute/CBIAS_napari_workshop_2024’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Nov 27, 2024
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow’s past year of commit activity
    Python 2 1 0 0 Updated Nov 27, 2024
  • cbias2024_napari_demo Public

    Demo plugin for CBIAS 2024 Napari workshop

    FrancisCrickInstitute/cbias2024_napari_demo’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 27, 2024
  • sparks Public
    FrancisCrickInstitute/sparks’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 0 0 Updated Nov 18, 2024
  • OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    FrancisCrickInstitute/OmeSliCC’s past year of commit activity
    Python 7 1 0 0 Updated Nov 18, 2024
  • chronogram Public

    cast and annotate metadata, laboratory & clinical data

    FrancisCrickInstitute/chronogram’s past year of commit activity
    R 1 0 0 0 Updated Nov 8, 2024
  • CALM Public

    Crick Advanced Light Microscopy

    FrancisCrickInstitute/CALM’s past year of commit activity
    Jupyter Notebook 1 CC-BY-SA-4.0 1 4 0 Updated Nov 7, 2024
  • MT_Force_Spindle Public

    Public codes for Chu et al.,

    FrancisCrickInstitute/MT_Force_Spindle’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 28, 2024
  • network_invsync Public

    Verify ISE and YAML inventory are synchronized

    FrancisCrickInstitute/network_invsync’s past year of commit activity
    Python 0 GPL-3.0 0 0 11 Updated Oct 22, 2024
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