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105 Open 538 Closed
105 Open 538 Closed
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Issues list

[User Story] Apply strandbias filter for WGS TN workflow User-Story A User-Story describing new functionality
#1505 opened Nov 26, 2024 by mathiasbio
3 tasks
[User Story] Add new oncogenic values from clinvar User-Story A User-Story describing new functionality
#1502 opened Nov 14, 2024 by mathiasbio
3 tasks
[Assessment] Investigate DellyCNV variants with LowQual status in INFO field Assessment Investigation before a user-story can be made
#1501 opened Nov 14, 2024 by mathiasbio
SVTYPE in SNV files Bug Something isn't working
#1498 opened Nov 8, 2024 by LeilyR
2
[Bug] hg38 fails in balsamic release 16.0.0 validation Bug Something isn't working
#1496 opened Oct 24, 2024 by mathiasbio
[User Story] Delivery of additional CNV and BAF files to Caesar User-Story A User-Story describing new functionality
#1493 opened Oct 22, 2024 by mathiasbio
5 tasks
[User Story] improve IGH-DUX4 presentation in Scout Needs Refinement User-Story A User-Story describing new functionality
#1485 opened Oct 11, 2024 by mathiasbio
3 tasks
1
d4 file generation (for chanjo2 primarily)
#1484 opened Oct 9, 2024 by dnil
1
[User Story] Remove UMI family-size filtering for normal sample User-Story A User-Story describing new functionality
#1482 opened Oct 1, 2024 by mathiasbio
3 tasks
[User Story] Merge VarDict and TNscope results User-Story A User-Story describing new functionality
#1480 opened Sep 24, 2024 by mathiasbio
3 tasks
Release 16
1
@mathiasbio
[Maintenance] Add QC criteria for bait set Lymphoma MRD Maintenance Something which needs to be updated
#1478 opened Sep 13, 2024 by moahaegglund
1 of 3 tasks
1
1
[Maintenance] Standardise bait set and capture kit terminology Maintenance Something which needs to be updated
#1476 opened Aug 26, 2024 by mathiasbio
3 tasks
1
[User Story] PON for GMSsolid 15.2 User-Story A User-Story describing new functionality
#1474 opened Aug 15, 2024 by mathiasbio
6 tasks
Release 16
1
@mathiasbio
[User Story] PON for WES Exomecomprehensive 10.2 User-Story A User-Story describing new functionality
#1473 opened Aug 15, 2024 by mathiasbio
3 tasks
Release 16
1
@mathiasbio
[User Story] Fix issue with filtered regions in CNVkit User-Story A User-Story describing new functionality
#1468 opened Jul 26, 2024 by mathiasbio
3 tasks
Release 16
1
9
[User Story] Update TIDDIT to make use of single-end reads User-Story A User-Story describing new functionality
#1467 opened Jul 25, 2024 by mathiasbio
3 tasks
Release 17
1
1
PoN for GMCKsolid v. 4.2 User-Story A User-Story describing new functionality
#1460 opened Jun 28, 2024 by moahaegglund
3 tasks
Release 16
1
@mathiasbio
2
[Bug] Clear variant missing in TNscope T/N WGS case Bug Something isn't working
#1458 opened Jun 26, 2024 by mathiasbio
3
[Maintenance] Update gene model annotation resources Maintenance Something which needs to be updated
#1455 opened Jun 24, 2024 by dnil
3 tasks
[User Story] Rebuild GENS PON for better X coverage User-Story A User-Story describing new functionality
#1449 opened Jun 18, 2024 by mathiasbio
3 tasks
@mathiasbio
[User Story] Remove low-mappability variants from gnomad vcf used for GENS User-Story A User-Story describing new functionality
#1447 opened Jun 14, 2024 by mathiasbio
3 tasks
Release 17
@mathiasbio
[Bug] Fix tmp-dirs in some leaky rules Bug Something isn't working
#1446 opened Jun 12, 2024 by mathiasbio
1
[User Story] Ensure up to date Miro board of balsamic exists User-Story A User-Story describing new functionality
#1445 opened Jun 11, 2024 by mathiasbio
3 tasks
[User Story] Add MSI analysis User-Story A User-Story describing new functionality
#1443 opened Jun 5, 2024 by khurrammaqbool
3 tasks
Release 16
6
@khurrammaqbool
3
[User Story] Add more SV databases for frequency filtering User-Story A User-Story describing new functionality
#1442 opened May 29, 2024 by mathiasbio
3 tasks
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