[User Story] Update TIDDIT to make use of single-end reads

[mathiasbio]

Need

As a clinician I want to detect as many true SVs as possible. After the update planned in balsamic 16.0.0 we're going to have a lot more single-end reads in our bam files due to the UMI collapse implemented here: #1358

In a a recent version of TIDDIT there has been an update that greatly improves the use of single end reads in SV variant calling: https://github.com/SciLifeLab/TIDDIT/releases

It seems then like an opportune time to update TIDDIT as a part of release 16.

Suggested approach

Update TIDDIT and implement in release 16.

Test the new version in the new deduplicate with UMIs branch: #1358

Considered alternatives

No response

Deviation

No response

System requirements assessed

• Yes, I have reviewed the system requirements

Requirements affected by this story

No response

Risk assessment needed

• Needed
• Not needed

Risk assessment

No response

SOUPs

No response

Can be closed when

No response

Blockers

No response

Anything else?

No response

[ivadym]

I opened an issue for the package to be uploaded to Bioconda: SciLifeLab/TIDDIT#119.

I reviewed the errors and it seems there's a bug in the TIDDIT code. However, I'm not very familiar with Bioconda recipes. I also encountered a similar error with Cython when attempting to install it from scratch.