Dockerfile, add docker test and update in samtools dependency #21

	name: Docs

	on:
	push:
	branches: [main, dev, docs-describe-zarp-outputs]
	workflow_dispatch:

	jobs:

	docs:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout zarp repository
	uses: actions/checkout@v4

	- name: Setup miniconda & zarp env
	uses: conda-incubator/setup-miniconda@v3
	with:
	python-version: "3.10"
	mamba-version: "*"
	channels: conda-forge
	channel-priority: true
	auto-update-conda: false
	activate-environment: zarp
	environment-file: install/environment.yml
	auto-activate-base: false

	- name: Update zarp env with root. packages
	run: mamba env update -p $CONDA_PREFIX -f install/environment.root.yml

	- name: Update zarp env with dev. packages
	run: mamba env update -p $CONDA_PREFIX -f install/environment.dev.yml

	- name: Display all miniconda & env info
	run: \|
	conda info -a
	conda list

	- name: Cache build artifacts
	uses: actions/cache@v4
	with:
	key: ${{ github.ref }}
	path: .cache

	- name: Install doc requirements
	run: pip install -r docs/requirements.txt

	- name: Publish docs
	run: mkdocs gh-deploy --force --clean --verbose

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