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ychuest committed Oct 29, 2024
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Expand Up @@ -43,6 +43,7 @@ Awesome-LLMs-meet-genomes is a collection of state-of-the-art, novel, exciting L
- [RNA Prediction](#rna-prediction)
- [**Sequence Modeling**](#sequence-modeling)
- [Basics of Sequence Modeling](#basics-of-sequence-modeling)
- [Tokenization](#tokenization)
- [Quantization](#quantization)
- [Fine-tuning](#fine-tuning)
- [Reducing Knowledge Hallucination](#reducing-knowledge-hallucination)
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| 2024.01 | **Scavenging Hyena: Distilling Transformers into Long Convolution Models** | arXiv | [link](https://doi.org/10.48550/arXiv.2401.17574) | - |


## Tokenization
| Time | Title | Venue | Paper | Code |
| ---- | ------------------------------------------------------------ | :-----: | :----------------------------------------------------------: | :----------------------------------------------------------: |
| 2024.09 | **A Comparison of Tokenization Impact in Attention Based and State Space Genomic Language Models** | bioRxiv | [link](https://doi.org/10.1101/2024.09.09.612081) | - |
| 2024.04 | **Effect of tokenization on transformers for biological sequences** | Bioinformatics | [link](https://doi.org/10.1093/bioinformatics/btae196) | [link](https://github.com/technion-cs-nlp/BiologicalTokenizers) |
| 2023.10 | **Toward Understanding BERT-Like Pre-Training for DNA Foundation Models** | arXiv | [link](https://doi.org/10.48550/arXiv.2310.07644) | - |




## Quantization
| Time | Title | Venue | Paper | Code |
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