Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

SpatialDataWrapper #378

Merged
merged 58 commits into from
Oct 15, 2024
Merged

SpatialDataWrapper #378

merged 58 commits into from
Oct 15, 2024

Conversation

keller-mark
Copy link
Member

No description provided.

ilan-gold and others added 30 commits April 2, 2024 14:51
@ilan-gold
(refactor): separate out schema creation
3158ce8
@ilan-gold
(feat): initial pass at spatial data
9bef112
@ilan-gold
(feat): working notebook minus spots (maybe a vitessce bug?)
7cb5e8d
@ilan-gold
(fix): try to get spots to appear
6da2952
@ilan-gold
(chore): comment out other stuff to make widget show more
44f3834
@keller-mark
Fix visium config
4df1092
@ilan-gold
(feat): firstt pass at from_spatialdata_object
74f8c38
@ilan-gold
(refactor): refactor from_spatialdata_object and util funcs from st…
bd298cc 
…atic methods
@ilan-gold
(feat): add url capability
fdfcc20
@ilan-gold
(temp): spatial data fixes
aeb19e9
@ilan-gold
(chore): change variable names
3cc5bfa
@ilan-gold
(chore): fix notebooks
bd6fccf
@ilan-gold
(refactor): path->elem
c1b8e81
@ilan-gold
Merge branch 'main' into ig/anndata_api_cleanup
a4ca1d0
@ilan-gold
Merge branch 'main' into ig/anndata_api_cleanup
02e7913
@ilan-gold
Merge branch 'ig/anndata_api_cleanup' into ig/spatial_data
9668ea5
@ilan-gold
(chore): more clean ups and fixes
daec711
@ilan-gold
(refactor): small name changes
79574ff
@ilan-gold
Merge branch 'ig/anndata_api_cleanup' into ig/spatial_data
7ffc5e1
@ilan-gold
(refactor): revert public changes
b77a9fc
@ilan-gold
(fix): revert .ipynb files
e4d80e2
@ilan-gold
(chore): fix last final args
8620d18
@ilan-gold
(fix): name
08bd8d7
@ilan-gold
(fix): remove request_init completely and fix setup.cfg
ed5c494
@ilan-gold
Merge branch 'ig/anndata_api_cleanup' into ig/spatial_data
431d180
@ilan-gold
(fix): adapt to api
07c1db2
@ilan-gold
(chore): remove erroneous notebook
933d6de
@ilan-gold
(fix): add type support
596c420
@ilan-gold
(chore): add test
50ce52b
@ilan-gold
(fix): automatic lint
c8c93aa
ilan-gold and others added 26 commits May 24, 2024 12:18
@ilan-gold
(fix): add default for obsEmbedding
f906eb3
@ilan-gold
(fix): redefinition
eaf63a7
@ilan-gold
(fix): path and embeddingType swapped
ba10f0e
@ilan-gold
(fix): add annotattions to utils.py
6ea8c33
@ilan-gold
(chore): add spatialdata dep
c43845f
@ilan-gold
(fix): oops, comma for toml
91f27b6
@ilan-gold
(fix): no more python3.8 bc of spatialdata
7be038e
@ilan-gold
(fix): remove whitespace
eb12a00
@ilan-gold
(api): small api cleanups
8d6472a
@ilan-gold
(fix): args bug
779d4a1
@ilan-gold
(fix): try spatialdata from master
05c8dbd
@ilan-gold
(chore): lint
3862c70
@ilan-gold
(chore): try spatialdata update
559e6c5
@ilan-gold
(fix): image_elem usage + table key
bf5853b
@ilan-gold
(chore): update SpatialData
73b8f52
@ilan-gold
(fix): shapes_elem
6dc8779
@ilan-gold
(fix): capitalize name of obs set
d8db5e0
@ilan-gold
(fix): use table for spots
76a6652
@ilan-gold
(fix): capitalization
5f8cfca
@ilan-gold
(fix): first letter only
f7cba04
@ilan-gold
(fix): check self._coordination_values
b5e1a19
@ilan-gold
(chore): add obsSets check
d4ebe79
@keller-mark
Merge
f64bd51
@keller-mark
SpatialData changes into original SpatialData branch (#374)
eb22344 
* Try again

* Fix bugs

* Lint

* Update

* Omit
@keller-mark
Update pyproject.toml
0b04e15
@keller-mark
Keller mark/spatial data2 (#375)
0a4a4b0 
* Try again

* Fix bugs

* Lint

* Update

* Omit

* Add test

* JS version
@keller-mark keller-mark changed the title SpatialData changes SpatialDataWrapper Oct 15, 2024
@keller-mark keller-mark merged commit cd5b939 into main Oct 15, 2024
15 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@keller-mark @ilan-gold