Lint

vitessce · Oct 4, 2024 · d7f010d · d7f010d
1 parent de5066e
commit d7f010d
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Showing 3 changed files with 15 additions and 14 deletions.
diff --git a/tests/test_config.py b/tests/test_config.py
@@ -23,9 +23,11 @@
 class MockArtifactPath:
     def __init__(self, url):
         self.url = url
+
     def to_url(self):
         return self.url
 
+
 class MockArtifact:
     def __init__(self, name, url):
         self.name = name
@@ -167,6 +169,7 @@ def test_config_add_anndata_artifact():
     assert list(vc_artifacts.keys()) == ["http://example.com/adata.h5ad.zarr"]
     assert vc_artifacts["http://example.com/adata.h5ad.zarr"].name == "My anndata artifact"
 
+
 def test_config_add_dataset_add_files():
     vc = VitessceConfig(schema_version="1.0.15")
     vc.add_dataset(name='My Chained Dataset').add_file(

diff --git a/vitessce/config.py b/vitessce/config.py
@@ -234,7 +234,7 @@ def get_routes(self):
             routes += obj.get_routes()
 
         return routes
-    
+
     def get_artifacts(self):
         artifacts = {}
         for obj in self.objs:
@@ -1596,7 +1596,7 @@ def get_routes(self):
         for d in self.config["datasets"]:
             routes += d.get_routes()
         return routes
-    
+
     def get_artifacts(self):
         """
         Get all artifacts for this view config from the datasets.

diff --git a/vitessce/wrappers.py b/vitessce/wrappers.py
@@ -74,7 +74,7 @@ def get_routes(self):
         :rtype: list[starlette.routing.Route]
         """
         return self.routes
-    
+
     def register_artifact(self, artifact):
         """
         Register an artifact.
@@ -88,7 +88,6 @@ def register_artifact(self, artifact):
         self.artifacts[artifact_url] = artifact
         return artifact_url
 
-
     def get_artifacts(self):
         """
         Obtain the dictionary that maps artifact URLs to artifact objects.
@@ -448,7 +447,7 @@ def __init__(self, img_path=None, img_url=None, img_artifact=None, offsets_path=
         if num_inputs != 1:
             raise ValueError(
                 "Expected one of img_path, img_url, or img_artifact to be provided")
-        
+
         num_inputs = sum([1 for x in [offsets_path, offsets_url, offsets_artifact] if x is not None])
         if num_inputs > 1:
             raise ValueError(
@@ -465,14 +464,13 @@ def __init__(self, img_path=None, img_url=None, img_artifact=None, offsets_path=
         self.is_remote = img_url is not None
         self.local_img_uid = make_unique_filename(".ome.tif")
         self.local_offsets_uid = make_unique_filename(".offsets.json")
-        
+
         if img_artifact is not None:
             self._img_url = self.register_artifact(img_artifact)
 
         if offsets_artifact is not None:
             self._offsets_url = self.register_artifact(offsets_artifact)
 
-
     def convert_and_save(self, dataset_uid, obj_i, base_dir=None):
         # Only create out-directory if needed
         if not self.is_remote:
@@ -581,7 +579,7 @@ def __init__(self, img_path=None, img_url=None, img_artifact=None, offsets_path=
         if num_inputs != 1:
             raise ValueError(
                 "Expected one of img_path, img_url, or img_artifact to be provided")
-        
+
         num_inputs = sum([1 for x in [offsets_path, offsets_url, offsets_artifact] if x is not None])
         if num_inputs > 1:
             raise ValueError(
@@ -599,7 +597,7 @@ def __init__(self, img_path=None, img_url=None, img_artifact=None, offsets_path=
         self.is_remote = img_url is not None
         self.local_img_uid = make_unique_filename(".ome.tif")
         self.local_offsets_uid = make_unique_filename(".offsets.json")
-        
+
         if img_artifact is not None:
             self._img_url = self.register_artifact(img_artifact)
 
@@ -883,7 +881,7 @@ def __init__(self, img_path=None, img_url=None, img_artifact=None, coordinate_tr
         if num_inputs != 1:
             raise ValueError(
                 "Expected one of img_path, img_url, or img_artifact to be provided")
-        
+
         self._img_path = img_path
         self._img_url = img_url
         self._img_artifact = img_artifact
@@ -893,11 +891,11 @@ def __init__(self, img_path=None, img_url=None, img_artifact=None, coordinate_tr
             self.is_remote = False
         else:
             self.is_remote = True
-        
+
         if self._img_artifact is not None:
             # To serve as a placeholder in the config JSON URL field
             self._img_url = self.register_artifact(img_artifact)
-            
+
         self.local_dir_uid = make_unique_filename(".ome.zarr")
 
     def convert_and_save(self, dataset_uid, obj_i, base_dir=None):
@@ -976,7 +974,7 @@ def __init__(self, img_path=None, img_url=None, img_artifact=None, coordinate_tr
             self.is_remote = False
         else:
             self.is_remote = True
-        
+
         if self._img_artifact is not None:
             # To serve as a placeholder in the config JSON URL field
             self._img_url = self.register_artifact(img_artifact)
@@ -1095,7 +1093,7 @@ def __init__(self, adata_path=None, adata_url=None, adata_store=None, adata_arti
             self.is_remote = True
             self.is_store = False
             self.zarr_folder = None
-            
+
             # Store artifacts on AbstractWrapper.artifacts for downstream access,
             # e.g. in lamindb.save_vitessce_config
             if adata_artifact is not None: