Update notebook imports

vitessce · Sep 3, 2023 · 110b749 · 110b749
1 parent a103b03
commit 110b749
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Showing 8 changed files with 15 additions and 15 deletions.
diff --git a/docs/notebooks/cellbrowser_to_vitessce_config_conversion.ipynb b/docs/notebooks/cellbrowser_to_vitessce_config_conversion.ipynb
@@ -35,11 +35,11 @@
     "import json\n",
     "from os.path import join\n",
     "from vitessce import (\n",
-    "    convert_cell_browser_project_to_anndata,\n",
     "    AnnDataWrapper,\n",
     "    VitessceConfig,\n",
     ")\n",
-    "from vitessce.data_utils import VAR_CHUNK_SIZE"
+    "from vitessce.data_utils.anndata import VAR_CHUNK_SIZE\n",
+    "from vitessce.data_utils.ucsc_cellbrowser import convert_cell_browser_project_to_anndata"
    ]
   },
   {

diff --git a/docs/notebooks/data_export_files.ipynb b/docs/notebooks/data_export_files.ipynb
@@ -46,7 +46,7 @@
     "    CoordinationType as ct,\n",
     "    AnnDataWrapper,\n",
     ")\n",
-    "from vitessce.data_utils import (\n",
+    "from vitessce.data_utils.anndata import (\n",
     "    optimize_adata,\n",
     "    VAR_CHUNK_SIZE,\n",
     ")"
@@ -228,7 +228,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.0"
+   "version": "3.9.0"
   }
  },
  "nbformat": 4,

diff --git a/docs/notebooks/data_export_s3.ipynb b/docs/notebooks/data_export_s3.ipynb
@@ -47,7 +47,7 @@
     "    CoordinationType as ct,\n",
     "    AnnDataWrapper,\n",
     ")\n",
-    "from vitessce.data_utils import (\n",
+    "from vitessce.data_utils.anndata import (\n",
     "    optimize_adata,\n",
     "    VAR_CHUNK_SIZE,\n",
     ")"
@@ -222,7 +222,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.0"
+   "version": "3.9.0"
   }
  },
  "nbformat": 4,

diff --git a/docs/notebooks/widget_brain.ipynb b/docs/notebooks/widget_brain.ipynb
@@ -43,7 +43,7 @@
     "    CoordinationType as ct,\n",
     "    AnnDataWrapper,\n",
     ")\n",
-    "from vitessce.data_utils import (\n",
+    "from vitessce.data_utils.anndata import (\n",
     "    optimize_adata,\n",
     "    VAR_CHUNK_SIZE,\n",
     ")"
@@ -287,7 +287,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.0"
+   "version": "3.9.0"
   }
  },
  "nbformat": 4,

diff --git a/docs/notebooks/widget_brain_with_base_dir.ipynb b/docs/notebooks/widget_brain_with_base_dir.ipynb
@@ -43,7 +43,7 @@
     "    AnnDataWrapper,\n",
     "    BASE_URL_PLACEHOLDER,\n",
     ")\n",
-    "from vitessce.data_utils import (\n",
+    "from vitessce.data_utils.anndata import (\n",
     "    optimize_adata,\n",
     "    VAR_CHUNK_SIZE,\n",
     ")"

diff --git a/docs/notebooks/widget_genomic_profiles.ipynb b/docs/notebooks/widget_genomic_profiles.ipynb
@@ -38,7 +38,7 @@
     "    AnnDataWrapper,\n",
     "    MultivecZarrWrapper,\n",
     ")\n",
-    "from vitessce.data_utils import (\n",
+    "from vitessce.data_utils.multivec import (\n",
     "    adata_to_multivec_zarr,\n",
     ")\n",
     "from os.path import join\n",
@@ -212,7 +212,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.4"
+   "version": "3.9.0"
   }
  },
  "nbformat": 4,

diff --git a/docs/notebooks/widget_loom.ipynb b/docs/notebooks/widget_loom.ipynb
@@ -41,7 +41,7 @@
     "    CoordinationType as ct,\n",
     "    AnnDataWrapper,\n",
     ")\n",
-    "from vitessce.data_utils import (\n",
+    "from vitessce.data_utils.anndata import (\n",
     "    optimize_adata,\n",
     "    to_diamond,\n",
     "    VAR_CHUNK_SIZE,\n",
@@ -211,7 +211,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.0"
+   "version": "3.9.0"
   }
  },
  "nbformat": 4,

diff --git a/docs/notebooks/widget_pbmc.ipynb b/docs/notebooks/widget_pbmc.ipynb
@@ -43,7 +43,7 @@
     "    CoordinationType as ct,\n",
     "    AnnDataWrapper,\n",
     ")\n",
-    "from vitessce.data_utils import (\n",
+    "from vitessce.data_utils.anndata import (\n",
     "    optimize_adata,\n",
     "    VAR_CHUNK_SIZE,\n",
     ")"
@@ -201,7 +201,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.0"
+   "version": "3.9.0"
   }
  },
  "nbformat": 4,