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@virtool

Virtool

Viral infection diagnostics using next-generation sequencing

Getting Started

See the Virtool documentation to get started with the latest version of Virtool 4.

Versions

Virtool is currently undergoing a major transformation into a cloud-native application. This will mean Virtool can scale work across multiple hosts and run natively in Kubernetes and public cloud providers.

Virtool 4 series should be used for now. This version will continue to receive bug and security fixes for the forseeable future.

Virtool 5 and later will comprise multiple containerized services that need to run together. A deployment and migration guide will be provided.

Support

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  1. virtool virtool Public

    Viral infection diagnostics using next-generation sequencing

    Python 42 23

  2. virtool-ui virtool-ui Public

    The browser frontend for Virtool

    TypeScript 4 7

  3. virtool-workflow virtool-workflow Public

    A framework for building Virtool workflows

    Python 3 10

  4. virtool-core virtool-core Public

    Core utilities for Virtool and associated packages

    Python 3 9

Repositories

Showing 10 of 33 repositories
  • ref-plant-viruses Public

    An official Virtool reference for plant viruses

    virtool/ref-plant-viruses’s past year of commit activity
    1 MIT 3 6 0 Updated Nov 27, 2024
  • ref-builder Public

    Build and maintain reference sets of pathogen genome sequences.

    virtool/ref-builder’s past year of commit activity
    Python 2 1 0 0 Updated Nov 26, 2024
  • virtool Public

    Viral infection diagnostics using next-generation sequencing

    virtool/virtool’s past year of commit activity
    Python 42 MIT 23 8 1 Updated Nov 26, 2024
  • virtool-workflow Public

    A framework for building Virtool workflows

    virtool/virtool-workflow’s past year of commit activity
    Python 3 MIT 10 0 0 Updated Nov 25, 2024
  • iimi Public

    Virus diagnostics using machine learning

    virtool/iimi’s past year of commit activity
    R 2 1 1 1 Updated Nov 19, 2024
  • virtool-ui Public

    The browser frontend for Virtool

    virtool/virtool-ui’s past year of commit activity
    TypeScript 4 7 0 0 Updated Nov 18, 2024
  • dev Public

    Developer tooling for Virtool.

    virtool/dev’s past year of commit activity
    Python 2 4 0 0 Updated Nov 14, 2024
  • workflow-iimi Public

    A workflow for detecting known viruses using ML in Virtool

    virtool/workflow-iimi’s past year of commit activity
    HTML 1 2 0 0 Updated Nov 14, 2024
  • virtool-core Public

    Core utilities for Virtool and associated packages

    virtool/virtool-core’s past year of commit activity
    Python 3 MIT 9 0 1 Updated Nov 6, 2024
  • virtool-operator Public

    A Helm chart and Kubernetes operator for keeping Virtool updated without downtime.

    virtool/virtool-operator’s past year of commit activity
    Go 1 MIT 1 0 0 Updated Aug 26, 2024