chore: bumping versions of dependencies (#54)

varfish-org · Aug 25, 2023 · 2a5e76a · 2a5e76a
1 parent c156f7f
commit 2a5e76a
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/Snakefile b/Snakefile
@@ -155,7 +155,7 @@ rule all:
         f"output/full/annonars/cons-grch37-{DV.ucsc_cons_37}+{PV.annonars}/rocksdb/IDENTITY",
         f"output/full/annonars/cons-grch38-{DV.ucsc_cons_38}+{PV.annonars}/rocksdb/IDENTITY",
         # ----- genes
-        f"output/full/annonars/genes-{DV.acmg_sf}+{DV.gnomad_constraints}+{DV.dbnsfp}+{DV.today}+{PV.worker}/rocksdb/IDENTITY",
+        f"output/full/annonars/genes-{DV.acmg_sf}+{DV.gnomad_constraints}+{DV.dbnsfp}+{DV.today}+{PV.annonars}/rocksdb/IDENTITY",
         # -- worker data
         f"output/full/worker/genes-regions-grch37-{DV.refseq_37}+{PV.worker}/refseq_genes.bin",
         f"output/full/worker/genes-regions-grch37-{DV.ensembl_37}+{PV.worker}/ensembl_genes.bin",

diff --git a/environment.yml b/environment.yml
@@ -40,9 +40,9 @@ dependencies:
   # Parallel (de)compression.
   - pigz
   # Varfish related
-  - annonars =0.12.7
+  - annonars =0.14.1
   - viguno =0.1.6
-  - mehari =0.5.7
-  - varfish-server-worker =0.8.0
+  - mehari =0.6.2
+  - varfish-server-worker =0.10.1
   # S3 uploads
   - s5cmd =2.1.0