fix: only consider MAPPING/ALIGNING SUMMARY entries from dragen qc su… #198

	name: CI

	on:
	push:
	branches:
	- main
	pull_request:
	branches_ignore: []

	jobs:
	cancel-previous:
	runs-on: ubuntu-latest
	if: github.ref != 'refs/heads/main'
	steps:
	- uses: khan/pull-request-workflow-cancel@1.0.1
	with:
	workflows: "main.yml"
	env:
	GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'

	linting:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- name: Install Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"

	- name: Install dependencies
	run: \|
	pip install -r requirements/test_black.txt
	pip freeze

	- name: Run linting tools
	run: \|
	make lint

	- name: Comment PR
	if: github.event_name == 'pull_request' && failure()
	uses: marocchino/sticky-pull-request-comment@v1.1.0
	with:
	message: 'Please format your code with [black](https://black.readthedocs.io): `make black`.'
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

	sphinx-docs:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- name: Install Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"

	- name: Install dependencies
	run: \|
	pip install -r requirements/test.txt
	pip freeze

	- name: Build documentation
	run: \|
	cd docs
	make html


	testing:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version:
	- '3.10'
	- '3.11'
	- '3.12'
	needs: linting
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0 # we need tags for versioneer to work

	- name: Install Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	pip install -r requirements/test.txt
	pip freeze

	- name: Run tests
	run: pytest

	- uses: codecov/codecov-action@v3

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