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Merge branch 'master' of github.com:vanheeringen-lab/scepia
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simonvh committed Oct 7, 2020
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Expand Up @@ -26,15 +26,15 @@ $ conda config --add channels conda-forge
Now you can create an environment for scepia:

```
conda create -n scepia python=3 adjusttext biofluff gimmemotifs scanpy leidenalg louvain loguru geosketch
conda create -n scepia adjusttext biofluff gimmemotifs>=0.15.1 scanpy leidenalg louvain loguru geosketch
# Note: if you want to use scepia in a Jupyter notebook, you also have to install the following packages: `ipywidgets nb_conda`.
conda activate scepia
```

Install the latest release of scepia:

```
pip install git+https://github.com/vanheeringen-lab/scepia.git@0.3.4
pip install git+https://github.com/vanheeringen-lab/scepia.git@0.3.5
```

## Usage
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