Merge pull request #82 from vincelhx/main #41
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| name: CI Workflow for grdwindinversion | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| jobs: | ||
| test: | ||
| runs-on: ubuntu-latest | ||
| timeout-minutes: 360 # 6 hours limit for the job | ||
| steps: | ||
| # Checkout the code | ||
| - name: Checkout code | ||
| uses: actions/checkout@v4 | ||
| - uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| micromamba-version: "1.5.9-1" # any version from https://github.com/mamba-org/micromamba-releases | ||
| channels: tcevaer, conda-forge, defaults | ||
| init-shell: bash | ||
| post-cleanup: "all" | ||
| - name: Create environment and install tools | ||
| run: micromamba create -n grdwind_env pytest conda-build boa python=3.10 -y -c tcevaer -c conda-forge | ||
| - name: Build package | ||
| run: | | ||
| cd recipe | ||
| eval "$(micromamba shell hook --shell bash)" | ||
| micromamba activate grdwind_env | ||
| conda mambabuild . -c tcevaer -c conda-forge | ||
| # Install the built package into the environment | ||
| - name: Install the built package | ||
| run: | | ||
| eval "$(micromamba shell hook --shell bash)" | ||
| micromamba activate grdwind_env | ||
| conda install --use-local grdwindinversion -y -c tcevaer -c conda-forge | ||
| # Cache the test data if previously downloaded (up to 10 GB limit for the cache) | ||
| # WARNING : modify the key if the data is modified !! | ||
| - name: Cache test data | ||
| uses: actions/cache@v4 | ||
| id: cache | ||
| with: | ||
| path: ./test_data | ||
| key: test-data-v3 | ||
| restore-keys: test-data-v3 | ||
| # Download test data if not already cached | ||
| - name: Download test data | ||
| if: steps.cache.outputs.cache-hit != 'true' # Only download if cache miss | ||
| run: | | ||
| mkdir -p ./test_data/ | ||
| wget https://cloud.ifremer.fr/index.php/s/ExLQ2TnYAqozPWE/download -O /tmp/ecmwf.zip | ||
| unzip /tmp/ecmwf.zip -d ./test_data/ | ||
| wget https://cloud.ifremer.fr/index.php/s/kRgdOOPsjoZieZR/download -O /tmp/l1.zip | ||
| unzip /tmp/l1.zip -d ./test_data/ | ||
| timeout-minutes: 200 # Adjust depending on the size of your data | ||
| # Set up xsar configuration | ||
| - name: Setup xsar configuration | ||
| run: | | ||
| mkdir -p ~/.xsar | ||
| echo "data_dir: /tmp" > ~/.xsar/config.yaml | ||
| echo "auxiliary_dir: ./test_data/auxiliary" >> ~/.xsar/config.yaml | ||
| echo "path_dataframe_aux: ./test_data/auxiliary/active_aux.csv" >> ~/.xsar/config.yaml | ||
| # Set up grdwindinversion configuration | ||
| - name: Setup grdwindinversion configuration | ||
| run: | | ||
| mkdir -p ~/.grdwindinversion | ||
| echo "'ecmwf_0100_1h': ./test_data/ECMWF/forecast/hourly/0100deg/netcdf_light/%Y/%j/ECMWF_FORECAST_0100_%Y%m%d%H%M_10U_10V.nc" > ~/.grdwindinversion/data_config.yaml | ||
| echo "'ecmwf_0125_1h': ./test_data/ECMWF/0.125deg/1h/forecasts/%Y/%j/ecmwf_%Y%m%d%H%M.nc" >> ~/.grdwindinversion/data_config.yaml | ||
| #echo "'nc_luts_path': ./test_data/GMFS/nc_luts" >> ~/.grdwindinversion/data_config.yaml | ||
| #echo "'lut_cmod7_path': './test_data/GMFS/v1.6/GMF_cmod7_official/cmod7_and_python_script'" >> ~/.grdwindinversion/data_config.yaml | ||
| #echo "'lut_ms1ahw_path': './test_data/GMFS/v1.6/GMF_cmodms1ahw'" >> ~/.grdwindinversion/data_config.yaml | ||
| # Run the tests | ||
| - name: Run tests | ||
| run: | | ||
| eval "$(micromamba shell hook --shell bash)" | ||
| micromamba activate grdwind_env | ||
| pytest | ||
| # Optionally, upload test artifacts (NetCDF files or logs) if needed | ||
| #- name: Upload test artifacts | ||
| # if: failure() # Only upload on failure | ||
| # uses: actions/upload-artifact@v2 | ||
| # with: | ||
| # name: test-output | ||
| # path: ./test_output/ | ||
