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uclahs-cds · Mar 9, 2024 · d946618 · d946618
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diff --git a/development/contributors/index.html b/development/contributors/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Contributors</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/discussions/index.html b/development/discussions/index.html
@@ -98,7 +98,7 @@
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       <li class="breadcrumb-item active">Discussions</li>
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-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/flow-diagram/index.html b/development/flow-diagram/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Flow Diagram</li>
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-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/how-to-run/index.html b/development/how-to-run/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">How To Run</li>
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-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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@@ -110,7 +110,7 @@ <h2 id="how-to-run">How To Run</h2>
 <p><strong>The pipeline is currently configured to run on a SINGLE NODE mode with normal only, tumor only, normal-tumor paired, or multiple normal and tumor samples.</strong></p>
 <ol>
 <li>
-<p>Update the params section of the .config file (<a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/config/template.config">Example config</a>).</p>
+<p>Update the params section of the .config file (<a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/config/template.config">Example config</a>).</p>
 </li>
 <li>
 <p>Update the YAML.</p>

diff --git a/development/index.html b/development/index.html
@@ -98,7 +98,7 @@
     <li><a href="." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Home</li>
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-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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@@ -170,5 +170,5 @@ <h1 id="call-gsnp">call-gSNP</h1>
 
 <!--
 MkDocs version : 1.5.3
-Build Date UTC : 2024-03-08 00:27:00.448099+00:00
+Build Date UTC : 2024-03-09 01:12:02.196142+00:00
 -->
diff --git a/development/inputs/index.html b/development/inputs/index.html
@@ -106,7 +106,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Inputs</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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@@ -265,7 +265,7 @@ <h3 id="config">Config</h3>
 </tbody>
 </table>
 <h4 id="base-resource-allocation-updaters">Base resource allocation updaters</h4>
-<p>To update the base resource (cpus or memory) allocations for processes, use the following structure and add the necessary parts. The default allocations can be found in the <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/config">node-specific config files</a></p>
+<p>To update the base resource (cpus or memory) allocations for processes, use the following structure and add the necessary parts. The default allocations can be found in the <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/config">node-specific config files</a></p>
 <pre><code class="language-Nextflow">base_resource_update {
     memory = [
         [['process_name', 'process_name2'], &lt;multiplier for resource&gt;],

diff --git a/development/license/index.html b/development/license/index.html
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-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/outputs/index.html b/development/outputs/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Outputs</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/overview/index.html b/development/overview/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Overview</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/pipeline-steps/index.html b/development/pipeline-steps/index.html
@@ -120,7 +120,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Pipeline Steps</li>
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-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/7d15eccfb0798bb3d7a2265c3888ec826f6861a4/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/references/index.html b/development/references/index.html
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+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/48e4521e02d727dada5586043afe00680906eef8/README.md" class="icon icon-github"> Edit on GitHub</a>
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diff --git a/development/sitemap.xml.gz b/development/sitemap.xml.gz
diff --git a/versions.json b/versions.json
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     "title": "development",
     "aliases": [],
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-      "commit": "7d15eccfb0798bb3d7a2265c3888ec826f6861a4",
-      "date": "2024-03-07T16:26:09-08:00"
+      "commit": "48e4521e02d727dada5586043afe00680906eef8",
+      "date": "2024-03-08T17:11:15-08:00"
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