Deployed c4f9539 to development with MkDocs 1.5.3 and mike 2.0.0

uclahs-cds · Aug 12, 2024 · 1eb1dfe · 1eb1dfe
1 parent 9949685
commit 1eb1dfe
Show file tree

Hide file tree

Showing 13 changed files with 16 additions and 16 deletions.
diff --git a/development/contributors/index.html b/development/contributors/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Contributors</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/discussions/index.html b/development/discussions/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Discussions</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/flow-diagram/index.html b/development/flow-diagram/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Flow Diagram</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/how-to-run/index.html b/development/how-to-run/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">How To Run</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>
@@ -111,7 +111,7 @@ <h2 id="how-to-run">How To Run</h2>
 <p><strong>The pipeline is currently configured to run on a SINGLE NODE mode with normal only, tumor only, normal-tumor paired, or multiple normal and tumor samples.</strong></p>
 <ol>
 <li>
-<p>Update the params section of the .config file (<a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/config/template.config">Example config</a>).</p>
+<p>Update the params section of the .config file (<a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/config/template.config">Example config</a>).</p>
 </li>
 <li>
 <p>Update the YAML.</p>

diff --git a/development/index.html b/development/index.html
@@ -98,7 +98,7 @@
     <li><a href="." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Home</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>
@@ -170,5 +170,5 @@ <h1 id="call-gsnp">call-gSNP</h1>
 
 <!--
 MkDocs version : 1.5.3
-Build Date UTC : 2024-08-08 19:08:35.770868+00:00
+Build Date UTC : 2024-08-12 23:02:52.583380+00:00
 -->
diff --git a/development/inputs/index.html b/development/inputs/index.html
@@ -106,7 +106,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Inputs</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>
@@ -265,7 +265,7 @@ <h3 id="config">Config</h3>
 </tbody>
 </table>
 <h4 id="base-resource-allocation-updaters">Base resource allocation updaters</h4>
-<p>To update the base resource (cpus or memory) allocations for processes, use the following structure and add the necessary parts. The default allocations can be found in the <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/config">node-specific config files</a></p>
+<p>To update the base resource (cpus or memory) allocations for processes, use the following structure and add the necessary parts. The default allocations can be found in the <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/config">node-specific config files</a></p>
 <pre><code class="language-Nextflow">base_resource_update {
     memory = [
         [['process_name', 'process_name2'], &lt;multiplier for resource&gt;],

diff --git a/development/license/index.html b/development/license/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">License</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/outputs/index.html b/development/outputs/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Outputs</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/overview/index.html b/development/overview/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Overview</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/pipeline-steps/index.html b/development/pipeline-steps/index.html
@@ -120,7 +120,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">Pipeline Steps</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/references/index.html b/development/references/index.html
@@ -98,7 +98,7 @@
     <li><a href=".." class="icon icon-home" aria-label="Docs"></a></li>
       <li class="breadcrumb-item active">References</li>
     <li class="wy-breadcrumbs-aside">
-          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/984589e6dfff05d6d267cec45f3d02138cf89612/README.md" class="icon icon-github"> Edit on GitHub</a>
+          <a href="https://github.com/uclahs-cds/pipeline-call-gSNP/blob/c4f9539bf0186f138a93009215531823ab4a882d/README.md" class="icon icon-github"> Edit on GitHub</a>
     </li>
   </ul>
   <hr/>

diff --git a/development/sitemap.xml.gz b/development/sitemap.xml.gz
diff --git a/versions.json b/versions.json
@@ -4,8 +4,8 @@
     "title": "development",
     "aliases": [],
     "properties": {
-      "commit": "984589e6dfff05d6d267cec45f3d02138cf89612",
-      "date": "2024-08-08T12:07:58-07:00"
+      "commit": "c4f9539bf0186f138a93009215531823ab4a882d",
+      "date": "2024-08-12T16:02:19-07:00"
     }
   },
   {