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Update to SAMTools 1.20 #17

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Apr 18, 2024
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Update to SAMTools 1.20 #17

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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -10,6 +10,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
## [Unreleased]

---
## [1.20] 2024-04-17
### Changed
- Update SAMTools version to 1.20

## [1.19.2] 2024-01-24
### Changed
- Update SAMTools version to 1.19.2
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -3,7 +3,7 @@ ARG MINIFORGE_VERSION=22.9.0-2
FROM condaforge/mambaforge:${MINIFORGE_VERSION} AS builder

# Use mamba to install tools and dependencies into /usr/local
ARG SAMTOOLS_VERSION=1.19.2
ARG SAMTOOLS_VERSION=1.20
RUN mamba create -qy -p /usr/local \
-c bioconda \
-c conda-forge \
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -9,7 +9,7 @@ SAMtools documentation [here](http://www.htslib.org/doc/samtools.html).
# Version
| Tool | Version |
|------|---------|
|SAMtools| 1.19.2 |
|SAMtools| 1.20 |


---
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2 changes: 1 addition & 1 deletion metadata.yaml
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Expand Up @@ -5,7 +5,7 @@ maintainers: ['rhughwhite@mednet.ucla.edu']
contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet', 'Sorel Fitz-Gibbon', 'Beth Neilsen', 'Kiarod Pashminehazar']
languages: ['Dockerfile']
tools: ['SAMtools']
version: ['1.19.2']
version: ['1.20']
purpose: 'A tool for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format'
references: 'Li H et al. Bioinformatics 25, (2009)'
image_name: 'samtools'
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