dotfiles

Installation

via curl

sh -c "$(curl -fsSL https://raw.githubusercontent.com/tueda/dotfiles/go/install)"

via wget

sh -c "$(wget https://raw.githubusercontent.com/tueda/dotfiles/go/install -O -)"

via git

git clone https://github.com/tueda/dotfiles.git ~/.dotfiles && ~/.dotfiles/deploy.sh

Local settings

Optionally make/edit .bashrc.local and .gitconfig.local:

export LOCAL_BUILD_ROOT=/path/to/local/build/directory/for/linuxbrew/etc
prepend_path PATH /additional/path/to/bin

# Git (>=1.7.10) supports include directive.
[user]
    name = "My Name"
    email = myemail@example.com

The followings are rather deprecated.

Install Linuxbrew

NOTE: The following should work even without the above installation. The script install.sh is modulalized and independent of the private settings.

Make sure LOCAL_BUILD_ROOT is set if you don't want to install software in your home directory. Disk usage may become huge.

export LOCAL_BUILD_ROOT=/path/to/local/build

The bashrc.local file, to be generated in $LOCAL_BUILD_ROOT, must be called in your .bashrc:

[ -f $LOCAL_BUILD_ROOT/bashrc.local ] && . $LOCAL_BUILD_ROOT/bashrc.local

If Ruby (>=1.8.6) is not installed:

~/.dotfiles/install.sh openssl
~/.dotfiles/install.sh ruby
. $LOCAL_BUILD_ROOT/bashrc.local  # add ruby to PATH

Some features of Ruby may be missing (e.g., readline) and you may need to reinstall it via Linuxbrew later.

Install Linuxbrew:

~/.dotfiles/install.sh linuxbrew
. $LOCAL_BUILD_ROOT/bashrc.local  # add brew to PATH

Install the latest GCC:

# brew install binutils  # if any problem for new CPU instructions
brew install gcc --without-glibc  # installing glibc may make a mess

Development tools might be also updated:

brew install make gdb valgrind

Reinstall Ruby via Linuxbrew:

brew install ruby

Install the latest Git:

brew install git --without-tcl-tk  # if no Xlib
# brew install git --with-tcl-tk   # gitk

Install other software packages via Linuxbrew:

# Python via pyenv
brew install pyenv
# brew install pyenv
. $LOCAL_BUILD_ROOT/bashrc.local # set $PYENV_ROOT and initialize pyenv
brew install --only-dependencies python python3
CPPFLAGS="-I$(brew --prefix)/include" LDFLAGS="-L$(brew --prefix)/lib -Wl,-rpath,$(brew --prefix)/lib" pyenv install 2.7.13
CPPFLAGS="-I$(brew --prefix)/include" LDFLAGS="-L$(brew --prefix)/lib -Wl,-rpath,$(brew --prefix)/lib" pyenv install 3.6.1
pyenv install pypy2-5.7.1
pyenv install pypy3.5-5.8.0

pyenv global 2.7.13 3.6.1 pypy2-5.7.1  pypy3.5-5.8.0

pip install --upgrade pip
pip3 install --upgrade pip

pip install numpy sympy matplotlib ipython
pip3 install numpy sympy matplotlib ipython
pyenv rehash

pip install cython
pip3 install cython

pip install flake8 flake8_docstrings pep8-naming flake8-import-order
pyenv rehash

# Vim
brew install vim --with-luajit

# Neovim
brew install neovim/neovim/neovim
pip install neovim
pip3 install neovim
gem install neovim

# Gnuplot
# brew install fontconfig --without-docs  # If docbook2pdf is not available.
brew install gnuplot --with-cairo --with-pdflib-lite --with-x11

# FORM
brew install tueda/form/form --HEAD --with-debug --with-mpi  # Put --ignore-dependencies for preinstalled mpi
pip install python-form
pip3 install python-form
pypy -m pip install python-form
pypy3 -m pip install python-form

# igraph
brew install homebrew/science/openblas  # OS X has own blas but Linux not
# brew install libxml2  # if missing
brew install homebrew/science/igraph
pip install python-igraph
pip3 install python-igraph
pypy -m pip install python-igraph
pypy3 -m pip install python-igraph

# GiNaC
brew install ginac

# Snappy
brew install snappy
pip install python-snappy
pip3 install python-snappy
pypy -m pip install python-snappy
pypy3 -m pip install python-snappy

# PPL
brew install ppl
pip install pplpy
# pip3 install pplpy  # error
# pypy -m pip install pplpy  # error
# pypy3 -m pip install pplpy  # error

# opam
brew install opam
. $LOCAL_BUILD_ROOT/bashrc.local  # set $OPAMROOT
opam init
eval `opam config env`

opam install cpdf

# rust
brew install rust --with-racer
. $LOCAL_BUILD_ROOT/bashrc.local  # set $CARGO_HOME
cargo install rustfmt

# PARI/GP
brew install pari
pip install cypari
pip3 install cypari
# pypy -m pip install pip cypari  # error
# pypy3 -m pip install pip cypari  # error

# Misc.
brew install bash-completion
brew install colordiff
brew install htop

Caveats

After installing gcc in the above procedure, upgrading one of the libraries which gcc depends on, for example gmp, requires to make Linuxbrew believe that the brewed-gcc is not installed: upgrading gmp first removes the brewed-gmp, so that the brwed-gcc does not work. Unlinking brew unlink gcc is not enough because Linuxbrew checks executables in ${HOMEBREW_PREFIX}/opt/gcc/bin. So this directory has to be temporarily renamed, or some code in developement_tools.rb has to be modified.

# To upgrade a brewed library (e.g., gmp) on which the brewed gcc depends.
# The library is built with the system gcc.
brew unlink gcc
mv $(brew --prefix)/opt/gcc $(brew --prefix)/opt/gcc.bak
brew upgrade gmp
mv $(brew --prefix)/opt/gcc.bak $(brew --prefix)/opt/gcc
brew link gcc

# To upgrade the brewed ruby with a ruby installed by install.sh.
PATH=$(echo $LOCAL_BUILD_ROOT/ruby-*/bin):$PATH brew upgrade ruby

# To upgrade the brewed openssl, on which the brewed ruby depends.
brew fetch openssl
brew upgrade openssl

SSH URL

cd ~/.dotfiles
git remote set-url origin git@github.com:tueda/dotfiles.git