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unmapped-ngs-data

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decontaminer

amarinderthind / decontaminer

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DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…

bioinformatics rna-seq virus cancer ngs sequencing rnaseq bacteria omics fungus contamination investigation contamination-detection microbes infections unmapped-ngs-data contaminating-sequences decontaminer-pipeline decontaminer virusscan
  • Updated Oct 12, 2024
  • Perl

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