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transdecoder

Here are 4 public repositories matching this topic...

jlanga / smsk_trinotate

Snakemake workflow to run transdecoder + trinotate

snakemake sqlite blast transcriptome trinity snakemake-workflows hmmscan transdecoder trinotate

Updated Apr 16, 2021
Python

EBI-Metagenomics / workflow-is-cwl

This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts

workflow diamond common-workflow-language transcriptome cwl marine transdecoder cwl-workflow cwl-descriptions phmmer cwl-description

Updated Jun 2, 2020
HTML

PaulaRS / snakemake_transcriptome_workflow

Workflow for de novo transcriptome assemblies from paired-end illumina reads, annotation and quality checks

python snakemake annotation transcriptomics illumina fastq transdecoder rna-seq-pipeline workflow-reusable

Updated Mar 8, 2024
CAP CDS

victoria-r / BLASTandTransdecoder

Using BLAST and Transdecoder.

bash bioinformatics blast trinity protein-domains hmmscan transdecoder swissprot blastp profile-hmm

Updated Feb 7, 2023
Shell

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