Quickly search, compare, and analyze genomic and metagenomic data sets.

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Fast and space-efficient taxonomic classification of long reads

TAXnomic Profile Aggregation and STAndardisation

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

mSWEEP High-resolution sweep metagenomics using fast probabilistic inference

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

Parallelised and automated construction of metagenomic classifier databases of different tools

Metabarcoding analysis pipeline, using DADA2 and qiime2

A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG