Live code in Pandoc Markdown

A curated list of reproducible research case studies, projects, tutorials, and media

REANA: Reusable research data analysis platform

DaCy: The State of the Art Danish NLP pipeline using SpaCy

Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:

How to use Jupyter notebooks and R markdown to create living documents and reproducible reports.

My SwayWM dotfiles

Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.

Module 3: Reproducible Research and Data Analysis

Revistas de Economia com a nova classificação Qualis 2019: lista extraída a partir daquele PDF de quatrocentas páginas!

Get your Ph.D. reproducible with Python and Github

The accompanying R package for Rajeg's (2019) PhD thesis titled "Metaphorical profiles and near-synonyms: A corpus-based study of Indonesian words for Happiness"

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

The Micro Remote Sensing course - provides a complete introduction to reproducible flight planning, acquisition, pre-processing, and exemplar analysis of high resolution low budget image data using commercial and open software systems.

An R package for data archiving and linking with code

Popperized MLPerf benchmark workflows

my R environment

Snakemake workflow for Salmon quantification and FastQC quality controls

Build a re-usable end-to-end pipeline for predicting short-term rental prices in NYC

R utility functions