MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Post-analysis of immune repertoire sequencing data

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

A RepSeq processing swiss-knife

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

⚙️ A lightweight immune repertoire browser

Comparison of Adaptive Immune Receptor Repertoires

Substitution Profiles Using Related Families

Clustering of immune receptor repertoires

Browser of clonal trees showing evolutionary development of antibodies with ultra-long CDR3s in 50 cattle individuals

Immune repertoire sequencing data analysis packages for Linux/MacOS.

Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".