[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Machine-learning-based general bacterial promoter prediction tool.

PARE: a computational method to Predict Active Regulatory Elements

Find two-boxes transcription factor binding sites (made for sigma factor binding sites) by comparing intergenic DNA regions upstream pairs of orthologous genes using statistical analyses

A 2-in-1 script that leverages Pyota Libraries in order to spam the IOTA network (Tangle) or manually promote a transaction

Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

extract promoter sequence from A.thalian genome

Comprehensive in silico genomic analysis pipeline for domesticating non-model bacteria

miRNA promoter annotation based on deepCAGE data

This tool allows you to send predefined messages to target Instagram users. It sends your message to the targets every 3 minutes. You can use this tool to advertise your products to your potential customers. Just start the bot and lay down!

More accessible dump of the PWMs from ElemeNT (10.1080/21541264.2015.1067286)