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position-weight-matrix

Here are 8 public repositories matching this topic...

rushhan / Generative-Adversarial-User-Model-for-Reinforcement-Learning-Based-Recommendation-System-Pytorch

reinforcement-learning pytorch generative-adversarial-network gan dqn recommendation-system recommender-system pytorch-implementation dqn-pytorch position-weight-matrix cascading-dqn

Updated Nov 16, 2022
Python

A-high-discrimination-motif-scanner-and-variable-sensitivity

Gagniuc / A-high-discrimination-motif-scanner-and-variable-sensitivity

This is a high discrimination scanner designed to recognise DNA motifs within a long stretch of DNA. Most importantly, this implementation shows how to implement a variable sensitivity for detection, by modifying the pseudocount values.

javascript js pattern scanner matrix motif dna rna pwm discrimination position-weight-matrix

Updated Mar 21, 2022
HTML

A-high-discrimination-motif-scanner

Gagniuc / A-high-discrimination-motif-scanner

This is a scanner designed to recognise DNA motifs within a long stretch of DNA. It uses two models for discrimination, one model representing the target and the second model representing the background.

javascript training js scanner motif dna background dna-motif discrimination discriminant-analysis motif-finding position-weight-matrix

Updated Mar 21, 2022
HTML

kchu25 / MotifPvalue.jl

Threshold and p-value computations for Position Weight Matrices

bioinformatics genomics julia motif p-value transcription-factor-binding pwm motifs position-weight-matrix regulatory-genomics

Updated Dec 15, 2021
Julia

jeffasante / position-weight-matrix

Implementation of Position weight matrix on a DnaA 9-mers.

bio-informatics position-weight-matrix

Updated Dec 22, 2020
Go

chaolinzhanglab / PlotPWM.jl

Plot position weight matrices (PWM)

dna rna protein-rna-interactions binding-sites motifs protein-dna-interactions rna-binding-proteins tfbs transcription-factor-binding-site position-weight-matrix

Updated Nov 18, 2024
Julia

kchu25 / SeqLogo.jl

Plot position weight matrices (PWM)

dna rna pwm protein-rna-interactions binding-sites motifs protein-dna-interactions rna-binding-proteins tfbs position-weight-matrix transcription-factor-binding-sites

Updated Nov 18, 2024
Julia

FAhtisham / Random-Codes

Codes to preprocess biological data etc.

pwm position-weight-matrix

Updated Oct 15, 2020
Jupyter Notebook

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