Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Practical Haplotype Graph (PHG) version 2

strange pangenome and large graph visualization

Repository for the FantasticLamp pipeline

Analysis of shared parts of a pangenome

ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)

Notes upon pangenome graphs construction

Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.

Alignment of Pangenome Graphs with Ricci Flow

Library to parse, edit and handle in memory GFA graphs

Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants

Leveraging WES short reads for PAN-EXOME creation and analysis.

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