Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.

iFISH Probe Design: a Python3 package to build iFISH probes.

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

Tool for generating optimized nucleic acid biosensor sequences

Software suite for oligonucleotide native MS data treatment

ifpd2: a Python3.7+ package to build iFISH probes

Custom routes, pages and files for iFISH4U website.

An open-source platform for managing DNA synthesis processes.

Oligonucleotide Calculator

oligo format tools

Reference genome annotation file processing toolset

Command-line oligonucleotide frequency analysis tool

This software is used to automate workflow. It is used to compose a working protocol and calculate reagent for oligonucleotide synthesis.

K-Mer management tools

A tool for RNA mass spectrometry

⛓️ Automating construction of oligo library sequences for oligo array synthesis.

☣️ Convert Oligonucleotides to Literal DNA Strand Sequences

Documents and scripts for analysis of oligonucleotide synthesis errors.

A simplistic Shiny app for observing mutation data.