Mapping spatiotemporal patterns in an online and continuous fashion

Simulate dynamic environments and LiDAR observations

R package for camera trap data management

Illustrate how to fit dynamic occupancy model in TMB. Benchmarking vs. ADMB, Unmarked and JAGS.

Local occupancy modeling from Gaussian Mixture Models.

Website of workshop Quantitative Methods for Population Dynamics in R

Inferring poaching with multispecies dynamic occupancy models and hidden Markov models

Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked

Contains data and R code for paper on occupancy analyses of Brown bear habitat use in the Pyrenees

Data, code and manuscript for 'Spatial occupancy models for data collected on stream networks'

Calculate bias in occupancy estimate for static model

This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution.

Code to fit a multistate occupancy model with uncertainty in Jags

Data and code for a paper on Med monk seal distribution in Greece

A package for fast bayesian analysis of single season spatial occupancy models.

Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"

Includes the R code and the supporting materials for our paper "Using machine learning to identify nontraditional spatial dependence in occupancy data"

Bayesian Single-season Occupancy Model with JAGS using BLISS

Illustrate how to fit dynamic occupancy model in ADMB. Benchmarking with Unmarked and JAGS.